View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4891-Insertion-4 (Length: 945)

Name: NF4891-Insertion-4
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4891-Insertion-4
NF4891-Insertion-4
[»] chr4 (18 HSPs)
chr4 (174-611)||(24520742-24521172)
chr4 (7-172)||(24528574-24528741)
chr4 (719-923)||(24519824-24520025)
chr4 (646-723)||(24520635-24520712)
chr4 (488-572)||(32347600-32347683)
chr4 (440-539)||(11859990-11860088)
chr4 (508-572)||(25170244-25170308)
chr4 (505-570)||(26905396-26905461)
chr4 (646-738)||(4223904-4223996)
chr4 (646-738)||(26905531-26905623)
chr4 (440-597)||(6681714-6681871)
chr4 (719-775)||(26905582-26905638)
chr4 (658-737)||(26903637-26903716)
chr4 (717-786)||(26903674-26903743)
chr4 (719-786)||(4223879-4223945)
chr4 (508-570)||(28964834-28964897)
chr4 (505-539)||(7043412-7043446)
chr4 (721-787)||(32347398-32347464)
[»] chr8 (10 HSPs)
chr8 (439-577)||(11615505-11615643)
chr8 (505-572)||(9487824-9487891)
chr8 (646-736)||(44812216-44812306)
chr8 (510-572)||(6414657-6414718)
chr8 (719-780)||(25480050-25480112)
chr8 (648-728)||(25480001-25480081)
chr8 (509-570)||(25479871-25479932)
chr8 (558-611)||(44812333-44812386)
chr8 (719-786)||(44812189-44812255)
chr8 (443-515)||(44812411-44812482)
[»] chr5 (5 HSPs)
chr5 (484-572)||(17156603-17156691)
chr5 (505-570)||(31000701-31000767)
chr5 (719-786)||(15955053-15955120)
chr5 (505-572)||(38550105-38550174)
chr5 (685-738)||(15955079-15955132)
[»] scaffold0019 (1 HSPs)
scaffold0019 (505-570)||(59512-59577)
[»] chr7 (5 HSPs)
chr7 (484-604)||(30380627-30380749)
chr7 (719-785)||(293371-293437)
chr7 (719-786)||(297872-297939)
chr7 (693-738)||(293367-293412)
chr7 (313-367)||(35576157-35576211)
[»] chr6 (3 HSPs)
chr6 (717-786)||(1936805-1936874)
chr6 (484-572)||(11186853-11186943)
chr6 (505-570)||(29010860-29010926)
[»] chr2 (3 HSPs)
chr2 (506-567)||(38099204-38099265)
chr2 (505-570)||(40498004-40498069)
chr2 (535-604)||(30801860-30801927)
[»] chr3 (2 HSPs)
chr3 (658-737)||(34998497-34998574)
chr3 (719-788)||(34998468-34998535)
[»] chr1 (1 HSPs)
chr1 (505-570)||(51119484-51119550)
[»] scaffold0082 (1 HSPs)
scaffold0082 (892-923)||(49355-49386)


Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 174 - 611
Target Start/End: Complemental strand, 24521172 - 24520742
Alignment:
Q  174 aagattatggtagtgaagctaacaaaagtaacatttactcttcatctttgatattgtcccttgcattcataagtctagataccaactcattaaacttact 273  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24521172 aagattatggtagtgaagctaataaaagtaacatttactcttcacctttgatattgtcccttgcattcataagtctagataccaactcattaaacttact 24521073  T
Q  274 aatatgatcaaacaaattaccttcatattccagctttaacgagtacaagctcattttcatcatcaatcgattggttaatttgtttgatgcaaactttgat 373  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24521072 aatatgatcaaacacattaccttcatcttccagctttaacgagtacaagctcattttcatcatcaatcgattggttaatttgtttgatgcaaactttgat 24520973  T
Q  374 tccaacaaatgccacaatttctttggacaagttactttcaccccaatcactttaatatgtggatcatattagatattaatcaataactgcatttgtaact 473  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       |||||||||||| |||||||||||||    
T  24520972 tccaacaaatgccacaatttctttggacgagttactttcaccccaatcactttaatatgtggatcat-------attaatcaataaatgcatttgtaact 24520880  T
Q  474 aacttttatataagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaat 573  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  24520879 aacttttagataagtttgttttaaaattctattagttagttagacagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaaa 24520780  T
Q  574 ctcattacaaatgaataaaattcatattgcattcaata 611  Q
    |||||||||||||||||||| |||||||||||||||||    
T  24520779 ctcattacaaatgaataaaagtcatattgcattcaata 24520742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 5e-68
Query Start/End: Original strand, 7 - 172
Target Start/End: Complemental strand, 24528741 - 24528574
Alignment:
Q  7 attgatcaccacaattctttcctttccaaccattagttcctagtattt-attttctttt-gaagatttatgatcacccatcatttgttaactcttctcca 104  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||| ||| |||||||    
T  24528741 attgatcaccacaattctttcctttccaaccattagttactagtatttgattttctttttgaagatttatgatcacccatcatttgttgactattctcca 24528642  T
Q  105 aggatctcaccacctcatctagttgcattgtattttttcatgctaacactgactgcacaaattgtata 172  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24528641 aggatctcaccacctcgtctagttgcattgtattttttcatgctaacagtgactgcacaaattgtata 24528574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 719 - 923
Target Start/End: Complemental strand, 24520025 - 24519824
Alignment:
Q  719 ttatccaccttgttctataggcttatccatctggttatatagagaaaaacaccattgatgcgttaacagatcaagccttaatctagaaaagaatttactt 818  Q
    |||||||||||||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||||||||| ||||||| |||||||| || |||    
T  24520025 ttatccaccttgttctataggcttatccatctgtatctatatagaaaaacaccattgatgcgctaacagatcaagcattaatctggaaaagaacttgctt 24519926  T
Q  819 actatgacttagcccaagatataaagggaggcactatcagcggctgtc-tagattgaacggtcg-cggcttgttccacttcattgatttgacttcacttg 916  Q
    |||||| |||||||||| | ||||||| ||||||||||||| |||||| |||||||||| |||| |||| |||| |||||||||||||||||||||||||    
T  24519925 actatgccttagcccaa-aaataaaggaaggcactatcagc-gctgtcttagattgaac-gtcgacggc-tgtt-cacttcattgatttgacttcacttg 24519831  T
Q  917 actgaag 923  Q
    |||||||    
T  24519830 actgaag 24519824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 646 - 723
Target Start/End: Complemental strand, 24520712 - 24520635
Alignment:
Q  646 ctgatccaaaatctagaaaccaggttataattgtcttagagttttgacagtttatccaccatgttctataggcttatc 723  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24520712 ctgatccaaaatctagaaatcaggttataattgtcttagagttttgacagtttatccaccatgttctatagacttatc 24520635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 488 - 572
Target Start/End: Complemental strand, 32347683 - 32347600
Alignment:
Q  488 tttgttttaaaattctattagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 572  Q
    ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32347683 tttgtttcaaaatt-tgttagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 32347600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 440 - 539
Target Start/End: Complemental strand, 11860088 - 11859990
Alignment:
Q  440 tattagatattaatcaataactgcatttgtaactaacttttatataagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagtg 539  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||||| ||||||||||||  ||||||| |||||||||||    
T  11860088 tattagatattaatcaataactgcatttgtaactaacttttagataggtttg-tttcaaattctatgagttagttagattacttgttccacaagcaagtg 11859990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 508 - 572
Target Start/End: Original strand, 25170244 - 25170308
Alignment:
Q  508 gttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 572  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25170244 gttagttagatagattgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 25170308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 505 - 570
Target Start/End: Original strand, 26905396 - 26905461
Alignment:
Q  505 ttagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtg 570  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  26905396 ttagttagttagatagcttgttctaaaagcaagtgctattatgcctataaaaggctttgtattgtg 26905461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 646 - 738
Target Start/End: Complemental strand, 4223996 - 4223904
Alignment:
Q  646 ctgatccaaaatctagaaaccaggttataattgtcttagagttttgacagtttatccaccatgttctataggcttatccaccttgttctatag 738  Q
    ||||| ||||||||||||| |||||||||  ||||||  ||||||||||||||||| ||| |||||||| ||||||||||||| |||||||||    
T  4223996 ctgatgcaaaatctagaaatcaggttatagctgtcttccagttttgacagtttatctaccttgttctattggcttatccacctagttctatag 4223904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 646 - 738
Target Start/End: Original strand, 26905531 - 26905623
Alignment:
Q  646 ctgatccaaaatctagaaaccaggttataattgtcttagagttttgacagtttatccaccatgttctataggcttatccaccttgttctatag 738  Q
    |||||||| | ||||||||| ||||||||| ||| ||  |||||| |||||||||||||| |||||||||||||||||||||| |||||||||    
T  26905531 ctgatccatactctagaaactaggttataactgttttccagttttaacagtttatccaccttgttctataggcttatccacctggttctatag 26905623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 440 - 597
Target Start/End: Complemental strand, 6681871 - 6681714
Alignment:
Q  440 tattagatattaatcaataactgca-tttgtaactaacttttatataagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagt 538  Q
    ||||||||||||||||||||||||| ||||||||| | ||||| ||||||||| ||||||   || | ||||||||| ||  |||| || ||||||||||    
T  6681871 tattagatattaatcaataactgcactttgtaactgatttttagataagtttgctttaaa---ctctgagttagttatattacttgctccacaagcaagt 6681775  T
Q  539 -gatattgtgcctata-aaaggctttgtattgtgaatctcattacaaatgaataaaattca 597  Q
     | |  |||||||||| ||||||||||||||||||| ||||| || ||||||||| |||||    
T  6681774 ggcttgtgtgcctatataaaggctttgtattgtgaaactcataactaatgaataacattca 6681714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 719 - 775
Target Start/End: Original strand, 26905582 - 26905638
Alignment:
Q  719 ttatccaccttgttctataggcttatccatctggttatatagagaaaaacaccattg 775  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  26905582 ttatccaccttgttctataggcttatccacctggttctatagagaaaaacaccattg 26905638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 658 - 737
Target Start/End: Original strand, 26903637 - 26903716
Alignment:
Q  658 ctagaaaccaggttataattgtcttagagttttgacagtttatccaccatgttctataggcttatccaccttgttctata 737  Q
    |||||||||||||||||| ||| ||  |||||| |||| ||||||| | |||||||||||||||||||||| ||||||||    
T  26903637 ctagaaaccaggttataactgtttttcagttttaacagcttatccatcttgttctataggcttatccacctagttctata 26903716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 717 - 786
Target Start/End: Original strand, 26903674 - 26903743
Alignment:
Q  717 gcttatccaccttgttctataggcttatccatctggttatatagagaaaaacaccattgatgcgttaaca 786  Q
    ||||||||| ||||||||||||||||||||| || ||| |||| ||||||||||||||| | ||||||||    
T  26903674 gcttatccatcttgttctataggcttatccacctagttctataaagaaaaacaccattgctacgttaaca 26903743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 719 - 786
Target Start/End: Complemental strand, 4223945 - 4223879
Alignment:
Q  719 ttatccaccttgttctataggcttatccatctggttatatagagaaaaacaccattgatgcgttaaca 786  Q
    ||||| |||||||||||| |||||||||| || ||| ||||||| ||||||||||||||||| |||||    
T  4223945 ttatctaccttgttctattggcttatccacctagttctatagag-aaaacaccattgatgcgctaaca 4223879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 570
Target Start/End: Complemental strand, 28964897 - 28964834
Alignment:
Q  508 gttagttagatagcttgttctacaagcaagtgatat-tgtgcctataaaaggctttgtattgtg 570  Q
    |||||||||||||||||| ||||||||||||| | | | ||| |||||||||||||||| ||||    
T  28964897 gttagttagatagcttgtactacaagcaagtgttgtatttgcttataaaaggctttgtaatgtg 28964834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 505 - 539
Target Start/End: Complemental strand, 7043446 - 7043412
Alignment:
Q  505 ttagttagttagatagcttgttctacaagcaagtg 539  Q
    ||||||||||||||||||||| |||||||||||||    
T  7043446 ttagttagttagatagcttgtgctacaagcaagtg 7043412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 721 - 787
Target Start/End: Complemental strand, 32347464 - 32347398
Alignment:
Q  721 atccaccttgttctataggcttatccatctggttatatagagaaaaacaccattgatgcgttaacag 787  Q
    |||||||||||||||| | ||||||||  ||||| |||  ||||||||||||||| |||| ||||||    
T  32347464 atccaccttgttctattgacttatccacttggttctatcaagaaaaacaccattgctgcgctaacag 32347398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 7e-33; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 439 - 577
Target Start/End: Complemental strand, 11615643 - 11615505
Alignment:
Q  439 atattagatattaatcaataactgcatttgtaactaacttttatataagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagt 538  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||| ||||||||||||| ||||| |  ||||||||||    
T  11615643 atattagatattaatcaataactgcatttgtaactaacttctagataagtttgtttt-aaattcta-tagttagttagattgcttgctacacaagcaagt 11615546  T
Q  539 ga-tattgtgcctata-aaaggctttgtattgtgaatctca 577  Q
    || |  |||||||||| ||||||||||||||||||| ||||    
T  11615545 gacttgtgtgcctatataaaggctttgtattgtgaaactca 11615505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 505 - 572
Target Start/End: Original strand, 9487824 - 9487891
Alignment:
Q  505 ttagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 572  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  9487824 ttagttagttagatagcttgttctacaagcaagtaatattgtgtctataaaaggctttgtattgtgaa 9487891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 646 - 736
Target Start/End: Complemental strand, 44812306 - 44812216
Alignment:
Q  646 ctgatccaaaatctagaaaccaggttataattgtcttagagttttgacagtttatccaccatgttctataggcttatccaccttgttctat 736  Q
    |||||||||||||||||||||| | |||||  |||||  ||||||||||||||||||||| ||||||||||||| |||||||| |||||||    
T  44812306 ctgatccaaaatctagaaaccaaggtataaccgtcttccagttttgacagtttatccaccttgttctataggctcatccacctagttctat 44812216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 572
Target Start/End: Original strand, 6414657 - 6414718
Alignment:
Q  510 tagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 572  Q
    |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  6414657 tagttagatagcttgttctataagcaagtgttattgtgcctat-aaaggctttgtattgtgaa 6414718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 719 - 780
Target Start/End: Original strand, 25480050 - 25480112
Alignment:
Q  719 ttatccaccttgttctataggcttatccatctggttatatagagaaaaaca-ccattgatgcg 780  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||    
T  25480050 ttatccaccttgttctataggcttatccacctgattatatagagaaaaacacccattgatgcg 25480112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 648 - 728
Target Start/End: Original strand, 25480001 - 25480081
Alignment:
Q  648 gatccaaaatctagaaaccaggttataattgtcttagagttttgacagtttatccaccatgttctataggcttatccacct 728  Q
    |||||||| | ||||||||| ||||||| ||| ||  |||||| |||||||||||||| ||||||||||||||||||||||    
T  25480001 gatccaaactttagaaaccaagttataactgttttccagttttaacagtttatccaccttgttctataggcttatccacct 25480081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 509 - 570
Target Start/End: Original strand, 25479871 - 25479932
Alignment:
Q  509 ttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtg 570  Q
    ||||||| |||||||||| |||||||||||| |||||||| |||||||| ||||||||||||    
T  25479871 ttagttaaatagcttgttatacaagcaagtgctattgtgcttataaaagactttgtattgtg 25479932  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 558 - 611
Target Start/End: Complemental strand, 44812386 - 44812333
Alignment:
Q  558 gctttgtattgtgaatctcattacaaatgaataaaattcatattgcattcaata 611  Q
    ||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||    
T  44812386 gctttgtattgtgaaactcataacaaatgaatgaaattcatattgcatacaata 44812333  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 719 - 786
Target Start/End: Complemental strand, 44812255 - 44812189
Alignment:
Q  719 ttatccaccttgttctataggcttatccatctggttatatagagaaaaacaccattgatgcgttaaca 786  Q
    ||||||||||||||||||||||| ||||| || ||| ||| ||| |||||||||||| |||| |||||    
T  44812255 ttatccaccttgttctataggctcatccacctagttctattgag-aaaacaccattgttgcgctaaca 44812189  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 443 - 515
Target Start/End: Complemental strand, 44812482 - 44812411
Alignment:
Q  443 tagatattaatcaataactgcatt-tgtaactaacttttatataagtttgttttaaaattctattagttagtta 515  Q
    |||||||||||||| ||||||||| ||||||| | ||||| ||||||||||||| ||| ||||| |||||||||    
T  44812482 tagatattaatcaaaaactgcattctgtaact-atttttagataagtttgtttt-aaactctatgagttagtta 44812411  T

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Target: chr5 (Bit Score: 57; Significance: 3e-23; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 484 - 572
Target Start/End: Complemental strand, 17156691 - 17156603
Alignment:
Q  484 taagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtgaa 572  Q
    ||||||||||| |||| | |  || |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17156691 taagtttgtttcaaaaatttgctacttagttagatagtttgttctacaagcaagtgctattgtgcctataaaaggctttgtattgtgaa 17156603  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 505 - 570
Target Start/End: Original strand, 31000701 - 31000767
Alignment:
Q  505 ttagttagttagatagcttgttctacaagcaagtgatattg-tgcctataaaaggctttgtattgtg 570  Q
    |||||| ||||| |||||||||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  31000701 ttagttggttagctagcttgttctacaagcaagtgctattgatgcctataaaaagctttgtattgtg 31000767  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 719 - 786
Target Start/End: Complemental strand, 15955120 - 15955053
Alignment:
Q  719 ttatccaccttgttctataggcttatccatctggttatatagagaaaaacaccattgatgcgttaaca 786  Q
    ||||||| | ||||||||||||||||||| ||| || |||||||||||||||||||| |||| |||||    
T  15955120 ttatccatcctgttctataggcttatccacctgattctatagagaaaaacaccattgttgcgctaaca 15955053  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 505 - 572
Target Start/End: Complemental strand, 38550174 - 38550105
Alignment:
Q  505 ttagttagttagatagcttgttctacaagcaagtg--atattgtgcctataaaaggctttgtattgtgaa 572  Q
    |||||||||| ||||||||||||||||| ||||||  || |||| ||||||||||| |||||||||||||    
T  38550174 ttagttagttggatagcttgttctacaaccaagtgctattttgtccctataaaaggttttgtattgtgaa 38550105  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 685 - 738
Target Start/End: Complemental strand, 15955132 - 15955079
Alignment:
Q  685 agttttgacagtttatccaccatgttctataggcttatccaccttgttctatag 738  Q
    |||||| |||||||||||| | ||||||||||||||||||||||  ||||||||    
T  15955132 agttttaacagtttatccatcctgttctataggcttatccacctgattctatag 15955079  T

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Target: scaffold0019 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 505 - 570
Target Start/End: Complemental strand, 59577 - 59512
Alignment:
Q  505 ttagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtg 570  Q
    ||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  59577 ttagttagttaaatagcttgttctacaagcaagtgccattgtgcctataaaaggctttgtattgtg 59512  T

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Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 484 - 604
Target Start/End: Original strand, 30380627 - 30380749
Alignment:
Q  484 taagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagtga---tattgtgcctataaaaggctttgtattgtgaatctcatta 580  Q
    ||||||||||| ||||| |||||||||||||||||  ||||||| |||||  |||||   | ||||||||||| |||||||||||||||||| |||||||    
T  30380627 taagtttgtttcaaaat-ctattagttagttagattacttgttccacaagtgagtgacttttttgtgcctatataaggctttgtattgtgaaactcatta 30380725  T
Q  581 caaatgaataaaattcatattgca 604  Q
    | ||||||||| ||||| ||||||    
T  30380726 ctaatgaataagattcacattgca 30380749  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 719 - 785
Target Start/End: Original strand, 293371 - 293437
Alignment:
Q  719 ttatccaccttgttctataggcttatccatctggttatatagagaaaaacaccattgatgcgttaac 785  Q
    |||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| |||| ||||    
T  293371 ttatccaccttgctctataggcttatccacctggttctatagagaaaaacaccattgctgcgctaac 293437  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 719 - 786
Target Start/End: Original strand, 297872 - 297939
Alignment:
Q  719 ttatccaccttgttctataggcttatccatctggttatatagagaaaaacaccattgatgcgttaaca 786  Q
    |||||||||||| ||||||| ||||||||  ||||| || ||||||||||||||||| |||| |||||    
T  297872 ttatccaccttgctctatagacttatccacatggttctacagagaaaaacaccattgctgcgctaaca 297939  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 693 - 738
Target Start/End: Original strand, 293367 - 293412
Alignment:
Q  693 cagtttatccaccatgttctataggcttatccaccttgttctatag 738  Q
    ||||||||||||| || ||||||||||||||||||| |||||||||    
T  293367 cagtttatccaccttgctctataggcttatccacctggttctatag 293412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 313 - 367
Target Start/End: Original strand, 35576157 - 35576211
Alignment:
Q  313 cgagtacaagctcattttcatcatcaatcgattggttaatttgtttgatgcaaac 367  Q
    |||||||||  ||||||| |||||||||| |||||||||| || |||||||||||    
T  35576157 cgagtacaaattcatttttatcatcaatcaattggttaatctgattgatgcaaac 35576211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 717 - 786
Target Start/End: Complemental strand, 1936874 - 1936805
Alignment:
Q  717 gcttatccaccttgttctataggcttatccatctggttatatagagaaaaacaccattgatgcgttaaca 786  Q
    |||||||||||||||| ||||| |||||||| |||||| |||| |||||||||||||||||||| |||||    
T  1936874 gcttatccaccttgttttatagacttatccacctggttctataaagaaaaacaccattgatgcgataaca 1936805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 484 - 572
Target Start/End: Complemental strand, 11186943 - 11186853
Alignment:
Q  484 taagtttgttttaaaattctattagttagttagatagcttgttctacaagcaagtga---tattgtgcctataaaaggctttgtattgtgaa 572  Q
    ||||||||||| ||||| ||| |||||||| ||||  |||| |||||||||||||||   | ||||||||||| ||||||||||||||||||    
T  11186943 taagtttgtttcaaaat-ctaatagttagtgagattacttgctctacaagcaagtgactcttttgtgcctatataaggctttgtattgtgaa 11186853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 505 - 570
Target Start/End: Complemental strand, 29010926 - 29010860
Alignment:
Q  505 ttagttagttagatagcttgttctacaagcaag--tgatattgtgcctataaaaggctttgtattgtg 570  Q
    ||||||||| ||||||||||| |||||||||||  | ||||| |||||||||||||||||||| ||||    
T  29010926 ttagttagtgagatagcttgtgctacaagcaagcatcatatt-tgcctataaaaggctttgtaatgtg 29010860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 506 - 567
Target Start/End: Complemental strand, 38099265 - 38099204
Alignment:
Q  506 tagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtatt 567  Q
    |||||||||||||| |||||||||||| |||||  ||||||||||||||| |||||||||||    
T  38099265 tagttagttagataacttgttctacaaacaagttctattgtgcctataaacggctttgtatt 38099204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 505 - 570
Target Start/End: Original strand, 40498004 - 40498069
Alignment:
Q  505 ttagttagttagatagcttgttctacaagcaagtgatattgtgcctataaaaggctttgtattgtg 570  Q
    |||||| ||||||| |||||||||||  ||||||| |||||||| |||||||||||||||||||||    
T  40498004 ttagtttgttagattgcttgttctaccggcaagtgctattgtgcatataaaaggctttgtattgtg 40498069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 535 - 604
Target Start/End: Complemental strand, 30801927 - 30801860
Alignment:
Q  535 aagtgatattgtgcctataaaaggctttgtattgtgaatctcattacaaatgaataaaattcatattgca 604  Q
    ||||||||||||||||||||||||| |||||||||||| ||  | | || ||||| ||||||||||||||    
T  30801927 aagtgatattgtgcctataaaaggccttgtattgtgaaact--tcaaaactgaatgaaattcatattgca 30801860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 658 - 737
Target Start/End: Complemental strand, 34998574 - 34998497
Alignment:
Q  658 ctagaaaccaggttataattgtcttagagttttgacagtttatccaccatgttctataggcttatccaccttgttctata 737  Q
    |||||||||||||||||| ||| ||  |||||| |||||||||||||| |||  ||||||||||||||||| ||||||||    
T  34998574 ctagaaaccaggttataactgttttccagttttaacagtttatccaccttgt--tataggcttatccacctggttctata 34998497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 719 - 788
Target Start/End: Complemental strand, 34998535 - 34998468
Alignment:
Q  719 ttatccaccttgttctataggcttatccatctggttatatagagaaaaacaccattgatgcgttaacaga 788  Q
    ||||||||||||||  ||||||||||||| |||||| |||| ||||||||||||||| |||| |||||||    
T  34998535 ttatccaccttgtt--ataggcttatccacctggttctataaagaaaaacaccattgctgcgctaacaga 34998468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 505 - 570
Target Start/End: Original strand, 51119484 - 51119550
Alignment:
Q  505 ttagttagttagatagcttgttctacaagcaagtgatat-tgtgcctataaaaggctttgtattgtg 570  Q
    ||||||||||||||||||||| ||||||| ||||| ||| | ||| |||||||||||||||| ||||    
T  51119484 ttagttagttagatagcttgtgctacaagtaagtgttatatttgcatataaaaggctttgtaatgtg 51119550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0082 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0082
Description:

Target: scaffold0082; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 892 - 923
Target Start/End: Complemental strand, 49386 - 49355
Alignment:
Q  892 cacttcattgatttgacttcacttgactgaag 923  Q
    ||||||||||||||||||||||||||||||||    
T  49386 cacttcattgatttgacttcacttgactgaag 49355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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