View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4891-Insertion-5 (Length: 915)
Name: NF4891-Insertion-5
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4891-Insertion-5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 660; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 178 - 895
Target Start/End: Original strand, 44976294 - 44977012
Alignment:
| Q |
178 |
gccaggagtaggaggatcagtaaggtaggctccatttgattattgtgaactgatttggagggtttggtgggtgaaagtatatacaacagggaaatccaca |
277 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44976294 |
gccaggagtaggagggtcagtaaggtaggctccatttgattattgtgaactgatttggagggtttggtgggtgaaagtatatacaacagggaaatccaca |
44976393 |
T |
|
| Q |
278 |
tagatatatcttggcctattcaattgttccatttgtttaacttggttctgttggggtcacgggtcacgttatagtagcaaaagtgagggaagaatccaaa |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44976394 |
tagatatatcttggcctattcaattgttccatttgtttaacttggttctgttggggtcacgggtcacgttatagtagcaaaagtgagggaagaatccaaa |
44976493 |
T |
|
| Q |
378 |
gctgtcatcctcattcattatgaaagtgattttgtcacttggctaagttgcttgcagctgatccatctcttgtctgctatgtctgagctatataatgttt |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44976494 |
gctgtcatcctcattcattatgaaagtgattttgtcacttggctaagttgcttgcagctgatccatctcttgtctgctatgtctgagctatataatgttt |
44976593 |
T |
|
| Q |
478 |
gtgttcacgggttcttcatttgtggtg---tcccgtgaacttgctcattttttgggttgaatgttgcattgcatggaatcaacatgtcactttgagtctt |
574 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44976594 |
gtgttcacgggttcttcatttgtggtgtactcccgtgaacttgctcattttttgggttgaatgttgcattgcatggaatcaacatgtcactttgagtctt |
44976693 |
T |
|
| Q |
575 |
agttacacatgttgcaaaattgcagttttgattaagctgcacacttttatatcgcggtaaaatgcagataaatgctgtcaatacggttgcaaatacctca |
674 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
44976694 |
agttacacatgttgcaaaattgcagttttgattaagctgcacacttttatatcgcggtaaaatgcagataaatgctgtcaatac-gttgcatatacctca |
44976792 |
T |
|
| Q |
675 |
aaatgcgttatattgtgaccacaactgcgggatcgcaacttactatggttacacatataacaacattagacaatgtgagaccattatagagaaccaggat |
774 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44976793 |
aaatgcgttatattgtgaccataactgc-ggatcgcagcttactatggttacacatataacaacattagacaatgtgagaccattatagagaaccaggat |
44976891 |
T |
|
| Q |
775 |
cattgctaacactaaacgacttttccaaatttctcttgtgtaataaaatgataagtttatgggagacttatttagggatgaaaatgggaacgtagaagag |
874 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44976892 |
cattgctaacactaaacgacttttccaaatttctcttgtgtaat-aaatgataagtttatgggagacttatttagggatgaaaatgggaacgtagaagag |
44976990 |
T |
|
| Q |
875 |
-aaacagaggatccacttaatt |
895 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
44976991 |
aaaacagaggatccacttaatt |
44977012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 44976082 - 44976247
Alignment:
| Q |
7 |
acctacctactaataaatctaatattaaaacttctaattcaaaagagataattgtgatattaatttatagctggtataaaaactttgttgatggatatta |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44976082 |
acctacctactaataaatctaatattaaaacttctaattaaaaagagataattgtgatattaatttatagctggtataaaaactttgttgatgg-----a |
44976176 |
T |
|
| Q |
107 |
tattatgtaagtagctctataagcaacactatgaaccttgaggtttttcctttagatgagattaaactcac |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44976177 |
tattatgtaagtagctctataagcaacactatgaaccttgaggtttttcctttagatgagattaaactcac |
44976247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University