View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4891_high_10 (Length: 237)
Name: NF4891_high_10
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4891_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24528958 - 24528736
Alignment:
| Q |
1 |
ttcttcattttattatcaacttcatcttcataaagtacaacatcatcttcataactaactagttttgttgaaggaatacacttcaacttttatgt-ttct |
99 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
24528958 |
ttcttcattttattatcaacttcatcttcataaagtaaagcatcatcttcataactaactagttttgttgaaggaatacactttaacttttatgtcttct |
24528859 |
T |
|
| Q |
100 |
ccttaatgcttcgtaaatcctccatgaattttggacatttaacttgcatgcgaccaaactcttccgagcaatgacacttgacagtagtaaaatctttttg |
199 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24528858 |
ccttaatgcttcgtaaatcctccatgaattttgtacatttaacttgcatgcgaccaaactcttccgagcaatgacacttgacagtagtcaaatctttttg |
24528759 |
T |
|
| Q |
200 |
ttaaaatctcctaccatattgat |
222 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
24528758 |
ttgaaatctcctaccatattgat |
24528736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 4443402 - 4443302
Alignment:
| Q |
64 |
tttgttgaaggaatacacttcaacttttatgtt-tctccttaatgcttcgtaaatcctccatgaattttggacatttaacttgcatgcgaccaaactctt |
162 |
Q |
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||||| ||||||| |||||||||||||| ||| |||| || ||||||| ||||| || ||| ||||||| | || ||||||||||| || ||||||||| |
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| T |
4443402 |
tttgtagaaggaacacacttcaacttttttgtcatctcatttatgcttcataaattcttcattaattttgaatatataacttgcatgtgatcaaactctt |
4443303 |
T |
|
| Q |
163 |
c |
163 |
Q |
| |
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| |
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|
| T |
4443302 |
c |
4443302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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