View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4891_high_12 (Length: 202)
Name: NF4891_high_12
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4891_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 45471644 - 45471607
Alignment:
| Q |
149 |
ccacaaaccattctcatgtgtgaacatgacctatatct |
186 |
Q |
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| T |
45471644 |
ccacaaaccattctcatgtgtgaacatgacctatatct |
45471607 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 45471774 - 45471739
Alignment:
| Q |
17 |
aagaagcggaacaaaataaagaagagtgacttttgtc |
53 |
Q |
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| T |
45471774 |
aagaagcgga-caaaataaagaagagtgacttttgtc |
45471739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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