View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4891_high_2 (Length: 441)
Name: NF4891_high_2
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4891_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 49164394 - 49163997
Alignment:
| Q |
16 |
ttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaattggattgctctgttcatgttgattattacca |
115 |
Q |
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| T |
49164394 |
ttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaattggattgctctgttcatgttgattattacca |
49164295 |
T |
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| Q |
116 |
tcaacacgatattcgatttcaaaagtactcttgtcaaaaatgtaaacctcaaaatgagaggttttctgatattgaaacagcaccatgtgaccatgatcta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164294 |
tcaacacgatattcgatttcaaaagtactcttgtcaaaaatgtaaacctcaaaatgagaggttttctgatattgaaacagcaccatgtgaccatgatcta |
49164195 |
T |
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| Q |
216 |
atgaataatgtgtagcaaattccttccaacccctttgaatccaaatatcaccatcctttttagtcaaatgtatttcccattctttgacatcgggagtctt |
315 |
Q |
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| T |
49164194 |
atgaataatgtgtagcaaattccttccaacccctttgaatccaaatatcaccatcctttttagtcaaatgtatttcccattctttgacatcgggagtctt |
49164095 |
T |
|
| Q |
316 |
gagaaacattggctttgataaatcaccgatatatttctcggtgaaagcatttggaattctctgcagtacattgaaatttatgttagcatgcatagaaa |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49164094 |
gagaaacattggctttgataaatcaccgatatatttctcagtgaaagcatttggaattctctgcagtacattgaaatttatgttagcatgcatagaaa |
49163997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 12880920 - 12880793
Alignment:
| Q |
118 |
aacacgatattcgatttcaaaagtactcttgtcaaaaatgtaaacctcaaaatgagaggttttctgatattgaaacagcaccatgtgaccatgatctaat |
217 |
Q |
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| T |
12880920 |
aacatgatattcaatttcaaaagtactctggtaaaatatgtaaacctcaaaatgtgatatttttttatattgaaacaccgtcatgtgtccatggtctaat |
12880821 |
T |
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| Q |
218 |
gaataatgtgtagcaaattccttccaac |
245 |
Q |
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| T |
12880820 |
gaataacgtgtagcaaattccttccaac |
12880793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 165 - 323
Target Start/End: Complemental strand, 12873905 - 12873747
Alignment:
| Q |
165 |
caaaatgagaggttttctgatattgaaacagcaccatgtgaccatgatctaatgaataatgtgtagcaaattccttccaacccctttgaatccaaatatc |
264 |
Q |
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| T |
12873905 |
caaaatgagagttttcttcatattgaaataataccatgtgcccatgatctagtgaataatatgtagcaaattctttccaacccttttgaaaccaaatatc |
12873806 |
T |
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| Q |
265 |
accatcctttttagtcaaatgtatttcccattctttgacatcgggagtcttgagaaaca |
323 |
Q |
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|||| |||||||| |||||||||| |||| |||| |||||||||||||||| |
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| T |
12873805 |
cccattgattttagtcgtgcacatttcccattttttgccatctggagtcttgagaaaca |
12873747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 22 - 382
Target Start/End: Complemental strand, 43750854 - 43750494
Alignment:
| Q |
22 |
acttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaattggattgctctgttcatgttgattattaccatcaaca |
121 |
Q |
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||||||||||||||||||||||||| |||||||| | | ||||| ||||||||| |||||| | ||| |||| |||||||||||||| |||||||| |
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| T |
43750854 |
acttgaaatttgtgattttggtctagtcttcttgcatgtaggtttttcatccaaattttcaacgaggttgttctgctcatgttgattatttccatcaacg |
43750755 |
T |
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| Q |
122 |
cgatattcgatttcaaaagtactcttgtcaaaaatgtaaacctcaaaatgagaggttttctgatattgaaacagcaccatgtgaccatgatctaatgaat |
221 |
Q |
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||||||| ||||| ||||||||||||| ||| ||||||| || ||||||||| ||||| | ||||||||||| || |||||| |||||||||| |||| |
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| T |
43750754 |
tgatattcaatttccaaagtactcttgttaaatatgtaaatcttaaaatgagatgttttttcatattgaaacatcagcatgtgtccatgatctatagaat |
43750655 |
T |
|
| Q |
222 |
aatgtgtagcaaattccttccaacccctttgaatccaaatatcaccatcctttttagtcaaatgtatttcccattctttgacatcgggagtcttgagaaa |
321 |
Q |
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|||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |||||||||||||| |
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| T |
43750654 |
aatgtgtagcaaattcattccatcccttgtgaatccaaatatcaccatcctttttagtcaaatgtacttcccattttttgtcatctggagtcttgagaaa |
43750555 |
T |
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| Q |
322 |
cattggctttgataaatcaccgatatatttctcggtgaaagcatttggaattctctgcagt |
382 |
Q |
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|||||| ||||| |||||||| ||||||||| |||||||||| ||||||| |||||||| |
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| T |
43750554 |
cattgggtttgacaaatcaccactatatttcttagtgaaagcatctggaattttctgcagt |
43750494 |
T |
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