View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4891_high_3 (Length: 368)
Name: NF4891_high_3
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4891_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 32856338 - 32855984
Alignment:
| Q |
1 |
cctttgaatcctagaatgagattggaatcatatttgtttgcattatttaatgaaaatatgaagaatggaccaacctcagagaggagctatggtttatttg |
100 |
Q |
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| T |
32856338 |
cctttgaatcctagaatgagattggaatcatatttgtttgcattatttaatgaaaatatgaagaatggaccaacctcagagaggaactatggtttatttg |
32856239 |
T |
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| Q |
101 |
agcctgatgaaagtatggcttacaatgttgggttgtcttcttttgcaaagtcatcaaatccttctacttcaatttctcttgcctcctctgccactaggac |
200 |
Q |
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| T |
32856238 |
agcctgatgaaagtatgacttacaatgttgggttgtcttcttttgcaaagtcatcaaatccttctacttcaatttctcttacctcctctgccactaggac |
32856139 |
T |
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| Q |
201 |
aaaggtnnnnnnnnngagtaaaaacattttatttttcttttccaataatacacaacttatttagcttatattaaaatttttgtgatagaaaatgaaaatg |
300 |
Q |
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| T |
32856138 |
aaaggtaaaaaaaaagagtaaaaacattttatttttcttttccaataatacacaacttatttagcttatattaaaatttttgtgatagaaaatgaaaatg |
32856039 |
T |
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| Q |
301 |
taatttagatcatgattattggtatctttgaagtacatgcaaattgtgggtatat |
355 |
Q |
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| T |
32856038 |
taatttagatcatgattattggtatctttgaagtacatgcaaattgtgggtatat |
32855984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 6292488 - 6292567
Alignment:
| Q |
1 |
cctttgaatcctagaatgagattggaatcatatttgtttgcattatttaatgaaaatatgaagaatggaccaacctcaga |
80 |
Q |
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|||||||||||||||||||| |||||| || ||||||||||| ||||||||| || |||| ||||||||||||||| |
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| T |
6292488 |
cctttgaatcctagaatgaggttggaagtttacttgtttgcattgtttaatgaagatttgaaacctggaccaacctcaga |
6292567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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