View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4891_low_1 (Length: 575)
Name: NF4891_low_1
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4891_low_1 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
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| [»] scaffold0014 (3 HSPs) |
| | |
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| [»] scaffold0059 (2 HSPs) |
| | |
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| [»] scaffold0015 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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| [»] scaffold0179 (1 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 19 - 565
Target Start/End: Original strand, 108394 - 108940
Alignment:
| Q |
19 |
aatcaaacatccctaaatttgattatgtttacataatctttataacaaagcactttctatgagccaaatctgtctcttaagccacctaatataaaccaaa |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
108394 |
aatcaaacgtccctaaatttgattatgtttacataatctttataacaaagcactttctatgagccaaatctgtctcttaagccacctaatctaaaccaaa |
108493 |
T |
|
| Q |
119 |
atcacataaaacccaagctacatacactatcaacaccaagagtagcaccggagaatagaaaacaacatccttccatcaaaccaatagcagcaacatgcct |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
108494 |
atcacataaaacccaagctacatacactatcaacaccaagagtagcaccggagaatagaaaacaacatccttccatcaaaccaatagcagcaacacgcct |
108593 |
T |
|
| Q |
219 |
catcaaaaacaagctacatacactatcactcaagactgtgatcactggttcgccgcatcatccccatcatcctccatgtcatccacgccatgaacactag |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
108594 |
catcaaaaacaagctacatacactatcactcgagactatgatcactagttcgccgcatcatccccatcatcctccatgtcatccacgccatgaacactag |
108693 |
T |
|
| Q |
319 |
cagtcctctcctcgtcgttgacaggaccactgaatgcaccatcccctttagagtagactggcctgtccccaggccacatgcaagactggtaatactgggc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
108694 |
cagtcctctcctcgtcgttgacaggaccaccgaatgcaccatccccttcagagtagactggcctgtccccaggccacatgcaagactggtaataatgggc |
108793 |
T |
|
| Q |
419 |
gggagtcaacatcgcataagtcggatccaagtgagcatcatagagatgctggtagatcccctgcttactcctgaagacagcagcttgctggtccatcatg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108794 |
gggagtcaacatcgcataagtcggatccaagtgagcatcatagagatgctggtagatcccctgcttactcctgaagacagcagcttgctggtccatcatg |
108893 |
T |
|
| Q |
519 |
aggaggtccctcttctcctgtcgccgagctctctgctcctacctatg |
565 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
108894 |
aggaggtccctcttctcctgttgccgagctctctgctcctacctatg |
108940 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 246 - 558
Target Start/End: Complemental strand, 12185125 - 12184813
Alignment:
| Q |
246 |
actcaagactgtgatcactggttcgccgcatcatccccatcatcctccatgtcatccacgccatgaacactagcagtcctctcctcgtcgttgacaggac |
345 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||| | |
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|
| T |
12185125 |
actcaagactgtgatcagtggttcgccgcatcatccccatcatcctacatgtcatcgacgccataaacactagcagtcctctcctcgtcgtcgacagggc |
12185026 |
T |
|
| Q |
346 |
cactgaatgcaccatcccctttagagtagactggcctgtccccaggccacatgcaagactggtaatactgggcgggagtcaacatcgcataagtcggatc |
445 |
Q |
| |
|
||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||| |
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|
| T |
12185025 |
caccgaatgcaccatcccctccaaagtagactggcctgtccccaggccacatgcaagactggtaatactaggcgggagtcatcatcacataagtcggatc |
12184926 |
T |
|
| Q |
446 |
caagtgagcatcatagagatgctggtagatcccctgcttactcctgaagacagcagcttgctggtccatcatgaggaggtccctcttctcctgtcgccga |
545 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
12184925 |
caagtgagcatcatagagatgctggtagatcccctggttactcctgaagacaacaacttgctggtccatcatgaggaggtccctcttctcctctcgccga |
12184826 |
T |
|
| Q |
546 |
gctctctgctcct |
558 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12184825 |
gctctctgctcct |
12184813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 11994769 - 11994639
Alignment:
| Q |
92 |
ctcttaagccacctaatataaaccaaaatcacataaaacccaagctacatacactatcaacaccaagagtagcaccggagaatagaaaacaacatccttc |
191 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||||| ||||||||| |||||||||||||| |
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|
| T |
11994769 |
ctctgaagccacctaatttaaaccaaaatcacataaacaccaagctacatatactatca---------gtagcactggagaatagcaaacaacatccttc |
11994679 |
T |
|
| Q |
192 |
catcaaaccaatagcagcaacatgcctcatcaaaaacaag |
231 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11994678 |
catcaaaccaatagcagcaacacgcctcatcaaaaacaag |
11994639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 11994887 - 11994826
Alignment:
| Q |
19 |
aatcaaacatccctaaatttgattatgtttacataatctttataacaaagcactttctatga |
80 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||| |||||||| | || ||||||||| |
|
|
| T |
11994887 |
aatcaaagatccctaaacttgattacgtttacataatcattataacacaacattttctatga |
11994826 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 141811 - 141699
Alignment:
| Q |
92 |
ctcttaagccacctaatataaaccaaaatcacataaaacccaagctacatacactatcaacaccaagagtagcaccggagaatagaaaacaacatccttc |
191 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| | ||||||||| |||| |
|
|
| T |
141811 |
ctctgaagccacctaatctaaacaaaaatcacataaacaccaagctacttacactatcaacaccaagagtagcactggagaatggcaaacaacattcttc |
141712 |
T |
|
| Q |
192 |
catcaaaccaata |
204 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
141711 |
cataaaaccaata |
141699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 141938 - 141900
Alignment:
| Q |
27 |
atccctaaatttgattatgtttacataatctttataaca |
65 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
141938 |
atccctaaacttgattatgtttacataatcattataaca |
141900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 118612 - 118676
Alignment:
| Q |
131 |
ccaagctacatacactatcaacaccaagagtagcaccggagaatagaaaacaacatccttccatc |
195 |
Q |
| |
|
|||| |||| || ||||||||||| ||||||||||| |||||| || |||| |||||||||||| |
|
|
| T |
118612 |
ccaaactacgtatactatcaacactaagagtagcactggagaacagcaaactgcatccttccatc |
118676 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 353 - 540
Target Start/End: Original strand, 15170 - 15357
Alignment:
| Q |
353 |
tgcaccatcccctttagagtagactggcctgtccccaggccacatgcaagactggtaatactgggcgggagtcaacatcgcataagtcggatccaagtga |
452 |
Q |
| |
|
||||||| ||||| |||||| |||||| |||||||||||||||||||||||| | | ||| | | |||||| ||||| | || | |||||| | || |
|
|
| T |
15170 |
tgcaccaccccctccagagtaaactggcatgtccccaggccacatgcaagacttgagaaactagtcaagagtcagcatcggacaatgcagatccatgcga |
15269 |
T |
|
| Q |
453 |
gcatcatagagatgctggtagatcccctgcttactcctgaagacagcagcttgctggtccatcatgaggaggtccctcttctcctgtc |
540 |
Q |
| |
|
|||||||||||||| |||||||| ||||| ||||| | || || || || |||| |||||||||||| |||||||| |||||||| |
|
|
| T |
15270 |
gcatcatagagatgttggtagatgccctggttacttcgtaaaacggctgcatgctaatccatcatgaggtagtccctctgctcctgtc |
15357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 540
Target Start/End: Original strand, 13946 - 14110
Alignment:
| Q |
376 |
ctggcctgtccccaggccacatgcaagactggtaatactgggcgggagtcaacatcgcataagtcggatccaagtgagcatcatagagatgctggtagat |
475 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||||| ||||||| ||||| | || ||||||||| | |||||||||||||||| ||| |||| |
|
|
| T |
13946 |
ctggcctgtccccaagccacatgcaagactgcagaaactggttaggagtcagcatcggacaaatcggatccatgcgagcatcatagagatgttggaagat |
14045 |
T |
|
| Q |
476 |
cccctgcttactcctgaagacagcagcttgctggtccatcatgaggaggtccctcttctcctgtc |
540 |
Q |
| |
|
|| || ||||| | ||| || || | || || ||||||||||| |||||||| |||||||| |
|
|
| T |
14046 |
gccttggttacttcggaaaactgccacatgttgttccatcatgagatagtccctctgctcctgtc |
14110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 183581 - 183536
Alignment:
| Q |
283 |
catcatcctccatgtcatccacgccatgaacactagcagtcctctc |
328 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
183581 |
catcatcctccatgtcatccactccatgaacactagcagtcctctc |
183536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 353170 - 353212
Alignment:
| Q |
283 |
catcatcctccatgtcatccacgccatgaacactagcagtcct |
325 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
353170 |
catcatcctccatgtcatccactccatgaacactagcagtcct |
353212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 27351875 - 27351830
Alignment:
| Q |
283 |
catcatcctccatgtcatccacgccatgaacactagcagtcctctc |
328 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
27351875 |
catcatcctccatgtcatccactccgtgaacactagcagtcctctc |
27351830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 512 - 558
Target Start/End: Complemental strand, 22183859 - 22183813
Alignment:
| Q |
512 |
catcatgaggaggtccctcttctcctgtcgccgagctctctgctcct |
558 |
Q |
| |
|
||||||||||||||||||| |||||| | |||||||||||||||||| |
|
|
| T |
22183859 |
catcatgaggaggtccctcgtctcctatagccgagctctctgctcct |
22183813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 29225118 - 29225073
Alignment:
| Q |
283 |
catcatcctccatgtcatccacgccatgaacactagcagtcctctc |
328 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
29225118 |
catcatcctccatgtcatccactccatgaacattagcagtcctctc |
29225073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 328
Target Start/End: Complemental strand, 29338417 - 29338372
Alignment:
| Q |
283 |
catcatcctccatgtcatccacgccatgaacactagcagtcctctc |
328 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
29338417 |
catcatcctccatgtcatccactccatgaacattagcagtcctctc |
29338372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 29960 - 29882
Alignment:
| Q |
137 |
tacatacactatcaacaccaagagtagcaccggagaatagaaaacaacatccttccatc--aaaccaatagcagcaaca |
213 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||| || |||| |||||||||||| | |||||||||||||||| |
|
|
| T |
29960 |
tacatacactatcaataccaagagtagcactagagaacagcaaactgcatccttccatccaataccaatagcagcaaca |
29882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 1542 - 1485
Alignment:
| Q |
138 |
acatacactatcaacaccaagagtagcaccggagaatagaaaacaacatccttccatc |
195 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || |||| |||||||||||| |
|
|
| T |
1542 |
acatacactatcaacaccaagagtagcactagagaacagcaaactgcatccttccatc |
1485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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