View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4891_low_10 (Length: 251)
Name: NF4891_low_10
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4891_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 45318728 - 45318494
Alignment:
| Q |
1 |
tctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcctcaattttctcaggctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45318728 |
tctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcctcaattttctcaggctc |
45318629 |
T |
|
| Q |
101 |
tatctggttaccagtaattttctcagactccaccaggttaacagtaggatttgctttcttaccatcgtcgtcgnnnnnnnnnnnnnnnnnttcagcctca |
200 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
45318628 |
tatctggttaccagtaattttttcagactccaccaggttaactgtaggatttgctttcttaccatcgtcgtcgtcatcatcatcatcatcttcagcctca |
45318529 |
T |
|
| Q |
201 |
attttctcaggctctacctggttaacagtaatttt |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
45318528 |
attttctcaggctctacctggttaacagtaatttt |
45318494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 45318805 - 45318659
Alignment:
| Q |
20 |
aattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcctcaattttctcaggctctatctggttaccagtaatt |
119 |
Q |
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||||||||||| ||||||||||||| |||||| ||| ||||||||||||||| ||||| |||||||||||||||| ||||| ||||| | || ||||| |
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| T |
45318805 |
aattttctcaggctccacctggttatcagtaggatttgttttcttatcatcatcatcttcagcctcaattttctcagtctctacctggtgaacaataatt |
45318706 |
T |
|
| Q |
120 |
ttctcagactccaccaggttaacagtaggatttgctttcttaccatc |
166 |
Q |
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||||||||||||||| |||||| |||||| ||||||||||| |||| |
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| T |
45318705 |
ttctcagactccacctggttaagagtaggcgttgctttcttatcatc |
45318659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 45318550 - 45318455
Alignment:
| Q |
65 |
atcatcatcttcttcggcctcaattttctcaggctctatctggttaccagtaattttctcagactccaccaggttaacagtaggatttgctttctt |
160 |
Q |
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||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||||| ||||||||||||||||| |
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| T |
45318550 |
atcatcatcatcttcagcctcaattttctcaggctctacctggttaacagtaattttctccgactccacctggttaactgtaggatttgctttctt |
45318455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 45318517 - 45318422
Alignment:
| Q |
2 |
ctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcctcaattttctcaggctc |
100 |
Q |
| |
|
||||||||||| |||| |||||||||| |||||||||||||||| ||||| |||||||||| |||||| | ||| |||||||||||||||||||| |
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| T |
45318517 |
ctctacctggttaacagtaattttctccgactccacctggttaactgtaggatttgctttcttctcatca---ttttcagcctcaattttctcaggctc |
45318422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 45318419 - 45318327
Alignment:
| Q |
1 |
tctctacctggtgaacaataattttctcagactccacctggttaagagtaggcgttgctttcttatcatcatcttcttcggcctcaattttctcag |
96 |
Q |
| |
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||||| |||||| ||| |||||||| ||| ||||||||||||| | |||||| || |||||||||||||| |||| |||||||||||||||| |
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|
| T |
45318419 |
tctctgcctggttaacgataattttttcatactccacctggtttatagtaggattttttttcttatcatcat---cttcagcctcaattttctcag |
45318327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 45318648 - 45318607
Alignment:
| Q |
195 |
gcctcaattttctcaggctctacctggttaacagtaattttt |
236 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||||| |
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|
| T |
45318648 |
gcctcaattttctcaggctctatctggttaccagtaattttt |
45318607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 235
Target Start/End: Complemental strand, 45318748 - 45318704
Alignment:
| Q |
191 |
ttcagcctcaattttctcaggctctacctggttaacagtaatttt |
235 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||| ||||||| |
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|
| T |
45318748 |
ttcagcctcaattttctcagtctctacctggtgaacaataatttt |
45318704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 45318814 - 45318775
Alignment:
| Q |
191 |
ttcagcctcaattttctcaggctctacctggttaacagta |
230 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||||| |
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| T |
45318814 |
ttcagcctcaattttctcaggctccacctggttatcagta |
45318775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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