View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4891_low_2 (Length: 550)

Name: NF4891_low_2
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4891_low_2
NF4891_low_2
[»] chr1 (17 HSPs)
chr1 (1-516)||(6592392-6592907)
chr1 (1-488)||(6601647-6602129)
chr1 (135-293)||(2010402-2010560)
chr1 (134-402)||(2011703-2011971)
chr1 (145-334)||(3340317-3340509)
chr1 (255-389)||(3372444-3372578)
chr1 (250-402)||(2006195-2006347)
chr1 (144-338)||(3361523-3361720)
chr1 (145-227)||(2948497-2948579)
chr1 (135-192)||(2019716-2019773)
chr1 (252-396)||(3218662-3218806)
chr1 (136-207)||(3218540-3218611)
chr1 (145-208)||(3349320-3349383)
chr1 (58-116)||(3349433-3349491)
chr1 (143-216)||(3372620-3372693)
chr1 (154-215)||(3378665-3378726)
chr1 (135-192)||(4335023-4335080)
[»] chr2 (5 HSPs)
chr2 (238-374)||(20934229-20934365)
chr2 (251-389)||(39273803-39273941)
chr2 (251-338)||(20952809-20952896)
chr2 (250-403)||(20923217-20923370)
chr2 (135-187)||(20923436-20923488)
[»] chr5 (1 HSPs)
chr5 (145-226)||(17969781-17969862)


Alignment Details
Target: chr1 (Bit Score: 504; Significance: 0; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Original strand, 6592392 - 6592907
Alignment:
Q  1 caagaaaataaccatgaaggtattttatagcgttggactgggtttttccagatttctaacacaaactctttaacctgccatctggttagataaagagtcc 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592392 caagaaaataaccatgaaggtattttatagcgttggtctgggtttttccagatttctaacacaaactctttaacctgccatctggttagataaagagtcc 6592491  T
Q  101 accgatcaatatcagtgacatcaatgtgatcccgagagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592492 accgatcaatatcagtgacatcaatgtgatcccgagagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaag 6592591  T
Q  201 cttgctcttgataactaaaaggtctttagaagtttcggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6592592 cttgctcttgataactaaaaggtctttagaagtttcggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagttggta 6592691  T
Q  301 gataaaatacttgttctggctgcttccttaattggcaaaatcgagagaatatggtctattacatggcctggtaaactactaactctatcgggctcctcgt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592692 gataaaatacttgttctggctgcttccttaattggcaaaatcgagagaatatggtctattacatggcctggtaaactactaactctatcgggctcctcgt 6592791  T
Q  401 ctgatacgcaaggagactgggattgttctcttctcttcatagatatagtcagacaaaaactccaatattcagaaaacaaattaggttactgtaaataaac 500  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592792 ctgatacgcaaggagactgggactgttctcttctcttcatagatatagtcagacaaaaactccaatattcagaaaacaaattaggttactgtaaataaac 6592891  T
Q  501 aagctaatgtaacaat 516  Q
    ||||||||||||||||    
T  6592892 aagctaatgtaacaat 6592907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 6601647 - 6602129
Alignment:
Q  1 caagaaaataaccatgaaggtattttatagcgttggactgggtttttccagatttctaacacaaactctttaacctgccatctggttagataaagagtcc 100  Q
    ||||||||||| |||||||||||||||||||||||  ||      ||||||||||| | |||||||||||||||  ||| ||||||||||| ||||||||    
T  6601647 caagaaaataagcatgaaggtattttatagcgttgccct------ttccagatttccagcacaaactctttaacaggccttctggttagatgaagagtcc 6601740  T
Q  101 accgatcaatatcagtgacatcaatgtgatcccga---gagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttga 197  Q
    | ||||||||||| || ||  ||||| | || |||   ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||    
T  6601741 atcgatcaatatcggtcactccaatgagctcgcgatgggagagcttgaactttttgattggcccagaatggagtaaaagtacatgatcaataattctcga 6601840  T
Q  198 aagcttgctcttgataactaaaaggtctttagaagtttcggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtag 297  Q
    ||| ||||||||||||||||||||||||| |||||| ||||||| |||||   ||||||||||||||||||||||||||| ||||||||||||||| | |    
T  6601841 aagtttgctcttgataactaaaaggtcttcagaagtgtcggagatacattggctatcaaacacaagatttggaagtgtggcccatttgtacctccatttg 6601940  T
Q  298 gtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaatatggtctattacatggcctggtaaactactaactctatcgggctcct 397  Q
    || |||||||||||||||||  |||||||||||||||||||||| |||||||| |||||||||| ||| |||||||||||||||| |||||||||||||     
T  6601941 gttgataaaatacttgttctcactgcttccttaattggcaaaattgagagaatttggtctattatatgacctggtaaactactaattctatcgggctccg 6602040  T
Q  398 cgtctgatacgcaaggagactgggattgttctcttctcttcatagatatagtcagacaaaaactccaatattcagaaaacaaattaggtta 488  Q
    | || | |||||||||||||||||||||||| ||||||||  |||||||| ||||||||||  ||||| | |||||||||||| |||||||    
T  6602041 catccgttacgcaaggagactgggattgttcccttctctt--tagatatattcagacaaaagatccaagaatcagaaaacaaaataggtta 6602129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 135 - 293
Target Start/End: Complemental strand, 2010560 - 2010402
Alignment:
Q  135 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtt 234  Q
    ||||||||||||||| |||||||| || |||   ||||||||||||||||||||||||    ||||||| |||| |||||||||| ||   |  || |||    
T  2010560 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataattgccaaaagctttctctcgataactaaagggcgatgggatgtt 2010461  T
Q  235 tcggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctcca 293  Q
     | |||| |||||  |||||||||||||||||||| | |||||||||||||||||||||    
T  2010460 gcagagacacattgtttatcaaacacaagatttggtattgtggtccatttgtacctcca 2010402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 134 - 402
Target Start/End: Complemental strand, 2011971 - 2011703
Alignment:
Q  134 gagagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagt 233  Q
    |||||||||||||||| |||||||| ||| ||   |||||||||||||| || ||||||    ||||||| ||||||||| ||  | ||| || ||| ||    
T  2011971 gagagagcttgaacttgttgattggcccataataaagtaaaagtacatggtcgataattgccaaaagctttctcttgatagctgcagggtgttcagatgt 2011872  T
Q  234 ttcggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaatt 333  Q
    | | || | |||||    |||||||||||||||||| | |||| |||||||||||||||| | | | |||||||||||||||||  |  | ||| |||||    
T  2011871 tgcagacacacattgtgaatcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaatacttgttctcacaacatccctaatt 2011772  T
Q  334 ggcaaaatcgagagaatatggtctattacatggcctggtaaactactaactctatcgggctcctcgtct 402  Q
    |||||    || | |||  ||||||||||||  |||||||||  ||||| |||||| ||||||||||||    
T  2011771 ggcaagcatgacaaaatccggtctattacatcacctggtaaaacactaattctatccggctcctcgtct 2011703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 334
Target Start/End: Complemental strand, 3340509 - 3340317
Alignment:
Q  145 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttc---ggaga 241  Q
    ||||| |||||||| |||||| | ||||||||||||||||||| ||||||| ||| ||||||||  |||||| || ||| ||| ||||||||    || |    
T  3340509 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctctcaataactgaagggtgtttggaagtttcagtagata 3340410  T
Q  242 gacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattg 334  Q
     |||||||  |||||||||||||| ||| |  |||| |||||| |  ||||| | | | ||||||| |||||||||  |||||||||||||||    
T  3340409 cacattcacgatcaaacacaagatctggtaaagtggaccatttctttctccaattgctcgataaaacacttgttcttactgcttccttaattg 3340317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 389
Target Start/End: Complemental strand, 3372578 - 3372444
Alignment:
Q  255 aaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaatatgg 354  Q
    ||||||||||||||| ||||||  |||||||| |||||||  | | ||||||| |||||||||  ||||||| ||||||||||  |  |||||||| ||     
T  3372578 aaacacaagatttggtagtgtgtaccatttgttcctccagctgctggataaaacacttgttctcactgcttctttaattggcatgagtgagagaatctga 3372479  T
Q  355 tctattacatggcctggtaaactactaactctatc 389  Q
    ||||||||||| |||||||| | ||||| ||||||    
T  3372478 tctattacatgacctggtaagcaactaattctatc 3372444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 402
Target Start/End: Complemental strand, 2006347 - 2006195
Alignment:
Q  250 ttatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaa 349  Q
    |||||||||||||||||||| | ||||| ||||||||||||||| | | | ||||||| |||||||||  | |||||| ||||||||||    || ||||    
T  2006347 ttatcaaacacaagatttggtattgtggcccatttgtacctccatttgttggataaaacacttgttctcacagcttccctaattggcaagtgtgacagaa 2006248  T
Q  350 tatggtctattacatggcctggtaaactactaactctatcgggctcctcgtct 402  Q
    | | |||||||||||  ||| |||||  ||||| |||||| |||||| |||||    
T  2006247 tcttgtctattacatcacctagtaaataactaattctatccggctccccgtct 2006195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 338
Target Start/End: Complemental strand, 3361720 - 3361523
Alignment:
Q  144 gaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaa---gtttcggag 240  Q
    |||||| |||||||| ||| || | ||||||||||||||||||| ||||||  ||| |||| | ||||||||  || ||||||  |||   || || |||    
T  3361720 gaacttgttgattggcccataatgaagtaaaagtacatgatcaacaattctcaaaaacttgttattgataaccgaagggtcttgggaatctgtatcagag 3361621  T
Q  241 agacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaa 338  Q
    |  || |  |||||||| ||||||||||| || |||  ||||||||  ||||| | | | |||||||||||||||||  |||||||||| ||||||||    
T  3361620 atgcaatgtttatcaaatacaagatttggtagcgtgtaccatttgttactccatttgctggataaaatacttgttctcactgcttccttgattggcaa 3361523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 2948497 - 2948579
Alignment:
Q  145 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtcttt 227  Q
    ||||| |||||||| |||||| | ||||||||||||||||||| ||||||  ||| ||||||||  |||||| || |||||||    
T  2948497 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattctcaaaaacttgctctcaataactgaagggtcttt 2948579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 2019773 - 2019716
Alignment:
Q  135 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataatt 192  Q
    ||||||||||||||| |||||||| || |||   ||||||||||||||||||||||||    
T  2019773 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataatt 2019716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 396
Target Start/End: Original strand, 3218662 - 3218806
Alignment:
Q  252 atcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaata 351  Q
    ||||||||||| |||||| ||||||  |||||| | |||||| |   | || |||| ||||||| |  |||||||| ||||||||||    ||||||||     
T  3218662 atcaaacacaatatttggtagtgtgtgccatttattcctccattcactggacaaaacacttgttttcactgcttccctaattggcaagtatgagagaatc 3218761  T
Q  352 tggtctattacatggcctggtaaactactaactctatcgggctcc 396  Q
    || ||||||||||| |||||||| | ||||| |||||| ||||||    
T  3218762 tgatctattacatgacctggtaagcaactaattctatccggctcc 3218806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 3218540 - 3218611
Alignment:
Q  136 gagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctc 207  Q
    ||||||| |||||| ||||| ||||||||| | |||| |||||||||||||| ||||||  | |||||||||    
T  3218540 gagagctggaacttgttgatcggtccagaatgaagtagaagtacatgatcaacaattctcaacagcttgctc 3218611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 3349383 - 3349320
Alignment:
Q  145 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctct 208  Q
    ||||| |||||| | |||||| | ||||||||||||||||||||||||||  ||| ||||||||    
T  3349383 aacttgttgattagcccagaatgaagtaaaagtacatgatcaataattctcaaaaacttgctct 3349320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 3349491 - 3349433
Alignment:
Q  58 aacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagt 116  Q
    ||||||||||||||||  || | || |||||||| |||| |||||||||||||||||||    
T  3349491 aacacaaactctttaatatgtcttccggttagatgaagaatccaccgatcaatatcagt 3349433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Complemental strand, 3372693 - 3372620
Alignment:
Q  143 tgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataact 216  Q
    ||||||| |||||||| |||||| |  |||||||||||||||||| ||||||  ||| |||| | |||||||||    
T  3372693 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataact 3372620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 3378726 - 3378665
Alignment:
Q  154 attggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataac 215  Q
    ||||| |||||| | ||||||||||||||||| ||||||||  ||| |||||||| ||||||    
T  3378726 attggcccagaatgaagtaaaagtacatgatcgataattctcaaaaacttgctctcgataac 3378665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 4335023 - 4335080
Alignment:
Q  135 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataatt 192  Q
    ||||| ||||||| | ||||||||||||||| | | ||||||||||||||||| ||||    
T  4335023 agagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatt 4335080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 374
Target Start/End: Complemental strand, 20934365 - 20934229
Alignment:
Q  238 gagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggca 337  Q
    ||||||||||   ||||||||||||||||||| ||||||  |||||||| |||||| |   ||||||||| |||||||||  |||||||| |||||||||    
T  20934365 gagagacattgtctatcaaacacaagatttgggagtgtgtaccatttgttcctccattttttagataaaacacttgttctcactgcttccctaattggca 20934266  T
Q  338 aaatcgagagaatatggtctattacatggcctggtaa 374  Q
    |    |  ||||| |||||||||||||| ||||||||    
T  20934265 agtaagtcagaatctggtctattacatgacctggtaa 20934229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 389
Target Start/End: Complemental strand, 39273941 - 39273803
Alignment:
Q  251 tatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaat 350  Q
    ||||||||||||||||||| ||||||  ||||||||||||||| | | | || |||| |||||||||  |||||||| ||||||||||    || |||||    
T  39273941 tatcaaacacaagatttggtagtgtgtaccatttgtacctccattggctggacaaaacacttgttctcactgcttccctaattggcaagcaagacagaat 39273842  T
Q  351 atggtctattacatggcctggtaaactactaactctatc 389  Q
     || ||||||||||| || ||||| | ||||| ||||||    
T  39273841 ctgatctattacatgacccggtaagcaactaattctatc 39273803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 338
Target Start/End: Complemental strand, 20952896 - 20952809
Alignment:
Q  251 tatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaa 338  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |   ||||||||| |||||||||  |||| ||| ||||| ||||    
T  20952896 tatcaaacacaagatttggaagtgtgttccatttgttcctccattttctagataaaacacttgttctcactgcatccctaatttgcaa 20952809  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 250 - 403
Target Start/End: Complemental strand, 20923370 - 20923217
Alignment:
Q  250 ttatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctgcttccttaattggcaaaatcgagagaa 349  Q
    ||||| ||||||||||  ||  |||||| |||||| | |||||| | | ||||||||| |||||||||  |||||||||| |||| |||    || ||||    
T  20923370 ttatcgaacacaagatccggttgtgtggaccattttttcctccatttgttagataaaacacttgttctccctgcttccttgattgacaagcgtgaaagaa 20923271  T
Q  350 tatggtctattacatggcctggtaaactactaactctatcgggctcctcgtctg 403  Q
     ||||||||||| |||  ||||||| | ||||| |||||||| ||||| |||||    
T  20923270 aatggtctattatatgatctggtaagcaactaattctatcggactccttgtctg 20923217  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 20923488 - 20923436
Alignment:
Q  135 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaa 187  Q
    ||||| ||||||||| |||||||| |||||| | |||||||||||||| ||||    
T  20923488 agagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaa 20923436  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 226
Target Start/End: Complemental strand, 17969862 - 17969781
Alignment:
Q  145 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctt 226  Q
    ||||| |||||||| || ||| | |||||||||||||||||||| |||||  ||| ||||| || ||||||| ||| |||||    
T  17969862 aacttgttgattggccctgaatgaagtaaaagtacatgatcaatgattctcaaaaacttgccctcgataactgaaaagtctt 17969781  T

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