View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4891_low_9 (Length: 323)
Name: NF4891_low_9
Description: NF4891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4891_low_9 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 45319102 - 45318792
Alignment:
| Q |
13 |
aatatagttgggatctgcatgttttgaagctagaggagaagcatttgaacttcttcttgatttctttgtcccttccaacgaaattacaatttctcctgaa |
112 |
Q |
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| T |
45319102 |
aatatagttgggatctgcatgttttgaagctagaggagaagcatttgaacttcttcttgatttctttgtcccttccaacgaaattacaatttctcctgaa |
45319003 |
T |
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| Q |
113 |
acattggttttcctttccctccttttctgtgatgtaatccatggttttgtttcagtggcatgctgaataccatatttgcataaatcatggcaggaactcg |
212 |
Q |
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| T |
45319002 |
acattggttttcctttccctccttttctgtgatgtactccatggttttgtttcagtggcatgctgaataccatatttgcataaatcatggcaggaactcg |
45318903 |
T |
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| Q |
213 |
cacgatcacgaagataacgtgaaagaatcttagccggaccttttgtgatagttattccctcgttaggatttgctttcttatcatcatattcagcctcaat |
312 |
Q |
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| T |
45318902 |
cacgatcacgaagataacgtgaaagaatcttagccggaccttttgtgatagttattccctcgttaggatttgctttcttatcatcatattcagcctcaat |
45318803 |
T |
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| Q |
313 |
tttctcaggct |
323 |
Q |
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||||||||||| |
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| T |
45318802 |
tttctcaggct |
45318792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 276 - 323
Target Start/End: Complemental strand, 45318470 - 45318423
Alignment:
| Q |
276 |
taggatttgctttcttatcatcatattcagcctcaattttctcaggct |
323 |
Q |
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| T |
45318470 |
taggatttgctttcttctcatcattttcagcctcaattttctcaggct |
45318423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 45318371 - 45318327
Alignment:
| Q |
276 |
taggatttgctttcttatcatcatattcagcctcaattttctcag |
320 |
Q |
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| T |
45318371 |
taggattttttttcttatcatcatcttcagcctcaattttctcag |
45318327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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