View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4892-Insertion-1 (Length: 898)
Name: NF4892-Insertion-1
Description: NF4892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4892-Insertion-1 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 781; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 8 - 898
Target Start/End: Original strand, 44578151 - 44579041
Alignment:
| Q |
8 |
aatacatattgtgatttcatgtaattgttaattccctataagcatttcatcctcctaattaacgacgtcgaaatcgatcacaaacattgatggtctcaaa |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |
|
|
| T |
44578151 |
aatacatattgtgatttcatgtatttgttaattccctataagcatttcatcctcctaattaacgacgtcgaaatcaatcataaacattgatgatctcaaa |
44578250 |
T |
|
| Q |
108 |
ctgctcatcctttcttcatcgtacacattttctctcactcattggactcgcactattacaatctctacaatatcaaatactattacaatttaatttatga |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44578251 |
ctgctcatcctttcttcatcgtacacattttctctcactcattggactcgcactattacaatctctacaatatcaaatactattacaatttaatttatga |
44578350 |
T |
|
| Q |
208 |
taagtcatatttgatgtacttctaataatatgttttattaaattgaggcattcggtgtactatatttagtaaatttgtacatcatcatttgcacatcctc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44578351 |
taagtcatatttgatgtacttctaataatatgttttattaaattgaggcattcggtgtactctatttagtaaatttgtacatcatcatttgcacatcctc |
44578450 |
T |
|
| Q |
308 |
tacttttctttcagtttctgcacaagtcttttgagtagaacaaaggtttgtagccttccttcaatctatcttattgctcatgaatcatttgtgctatttt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44578451 |
tacttttctttcagtttctgcacaagtcttttgagtagaacaaaggtttgtaaccttccttcaatctatcttattgctcatgaatcatttgtgctatttt |
44578550 |
T |
|
| Q |
408 |
gtttatgtaagcttttgaagnnnnnnnaattctgcgttcatagaattgagagaaactgaagtaaattgctaagtattattcattccaaatcttaaaagat |
507 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44578551 |
gtttatgtaagcttttgaagtttttttaattctgcgttcatagaattgagagaaactgaagtaaattgctaagtattattcattccaaatcttaaaagat |
44578650 |
T |
|
| Q |
508 |
agaagatagttattttgaagatagttattcattccaaattgctaagtattattcacactgttcttctaaatgcagaaaaaatatagttatagactttgtt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44578651 |
agaagatagttattttgaagatagttattcattccaaattgctaagtattattcacactgttcttctaaatgcagaaaaaatatagttatagactttgtt |
44578750 |
T |
|
| Q |
608 |
gagaaagtgaatattaaacaaaag-nnnnnnnnntactatagagaaacaagcagagaccaatgttgctctctgacaatgaatgttccgcagtgaaagtaa |
706 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44578751 |
gagaaagtgaatattaaacaaaagaaaaaaaaaatactatagagaaacaagcagagaccaatgttgctctctgacaatgaatgttccgcagtgaaagtaa |
44578850 |
T |
|
| Q |
707 |
cacacactagaacttattgatgagagaacaatggacactttcctaaggtagctgctgatcgcaatttcaaagaccatcaaagcatcgcatgagaaatttg |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44578851 |
cacacactagaacttattgatgagagaacaatggacactttcctaaggtagctgctgatcgcaatttcaaagaccatcaaagcatcacatgagaaatttg |
44578950 |
T |
|
| Q |
807 |
attaaaattaaaatatggtcttattaaaacatctggcccaaatatgttaatgtcttttctccaaacttctgctatata-caccagaatttcca |
898 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44578951 |
attaaaatt-aaatatggtcttattaaaacatctgccccaaatatgtt-atgtcttttctccaaacttctgctatataccaccagaatttcca |
44579041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 271 - 508
Target Start/End: Original strand, 34128624 - 34128861
Alignment:
| Q |
271 |
atttagtaaatttgtacatcatcatttgcacatcctctacttttctttcagtttctgcacaagtcttttgagtagaacaaaggtttgtagccttccttca |
370 |
Q |
| |
|
||||||||||| || |||||| ||||||||||| |||||| ||||||||| || |||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
34128624 |
atttagtaaatccgttcatcattatttgcacatcttctactcttctttcaggttttgcacaagtcttttcagtagaacaaaggtttgtatccttccttag |
34128723 |
T |
|
| Q |
371 |
atctatcttattgctcatgaatcatttgtgctattttgtttatgtaagcttttgaagnnnnnnnaattctgcgttcatagaattgagagaaactgaagta |
470 |
Q |
| |
|
||||| |||||||| || |||| |||| |||||||||||| ||| ||| ||||||| ||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
34128724 |
ttctattttattgcttattaatcgtttgagctattttgtttgtgtgagcgtttgaagtttttagaattctgagttcatataatttagagaaactgaagta |
34128823 |
T |
|
| Q |
471 |
aattgctaagtattattcattccaaatcttaaaagata |
508 |
Q |
| |
|
|| | |||| |||||||||||| |||||||||||||| |
|
|
| T |
34128824 |
aaattctaaatattattcattctgaatcttaaaagata |
34128861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 649 - 753
Target Start/End: Original strand, 34129102 - 34129204
Alignment:
| Q |
649 |
agaaacaagcagagaccaatgttgctctctgacaatgaatgttccgcagtgaaagtaacacacactagaacttattgatgagagaacaatggacactttc |
748 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| | |||||||| | |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34129102 |
agaaacaagcagagaccaatgttgctctctggcaatgaatgttggggagtgaaagca--acacactagaacttattgatgagaaaacaatggacactttc |
34129199 |
T |
|
| Q |
749 |
ctaag |
753 |
Q |
| |
|
||||| |
|
|
| T |
34129200 |
ctaag |
34129204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University