View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4892-Insertion-4 (Length: 552)

Name: NF4892-Insertion-4
Description: NF4892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4892-Insertion-4
NF4892-Insertion-4
[»] chr3 (3 HSPs)
chr3 (7-339)||(51587939-51588264)
chr3 (488-535)||(51587890-51587938)
chr3 (314-398)||(35301210-35301292)
[»] chr1 (3 HSPs)
chr1 (7-201)||(40224938-40225133)
chr1 (205-266)||(40225173-40225234)
chr1 (259-310)||(40225299-40225350)
[»] chr2 (2 HSPs)
chr2 (259-399)||(18106927-18107065)
chr2 (206-266)||(18106802-18106862)
[»] chr5 (1 HSPs)
chr5 (284-387)||(14625533-14625633)
[»] chr7 (1 HSPs)
chr7 (154-197)||(37511752-37511795)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 7 - 339
Target Start/End: Complemental strand, 51588264 - 51587939
Alignment:
Q  7 aagagcgacatcagctatggaatgatacttctgcatctgaaagatttggatccaatgg-gtctacgacgatggatatgggcgaaaacattgatgtaatca 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  51588264 aagagcgacatcagctatggaatgatacttctgcatctgaaagatttggatccaatggagtctacgacgatggataggggcgaaaacattgatgtaatca 51588165  T
Q  106 acggcggaggataggtgagagagatgagaacatagagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtctggct 205  Q
    |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51588164 acggcggaggataggtgagagagat--------agagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtctggct 51588073  T
Q  206 gaagaggtgaggttgtgggacctacaacggtaggtcgatcggtgttggtgtttgatgttgggaagaacaaagatcttaggtcgaaatctggctttagaat 305  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51588072 gaagaggtgaggttgtgggacctacaacggtaggtcgatcggtggtggtgtttgatgttgggaagaacaaagatcttaggtcgaaatctggctttagaat 51587973  T
Q  306 tgtcgtttgtgaagtagtagaaacaaagatttgt 339  Q
    ||||||||||||||||||||||||||||||||||    
T  51587972 tgtcgtttgtgaagtagtagaaacaaagatttgt 51587939  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 488 - 535
Target Start/End: Complemental strand, 51587938 - 51587890
Alignment:
Q  488 gtttgccca-aaaagctgctggtggaggtgtttgttacgatgaagggac 535  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  51587938 gtttgcccagaaaagctgctggtggaggtgtttgttacgatgaagggac 51587890  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 35301292 - 35301210
Alignment:
Q  314 gtgaagtagtagaaacaaagatttgtt--tgtttgttgtttttagaagggaaagaaaggtgaagagaaaaagggttcaggcttatga 398  Q
    |||||| ||||||||||||| |||||   |||||||| ||||||||||||||||    ||||||| |||||||||| | ||||||||    
T  35301292 gtgaagcagtagaaacaaaggtttgtgagtgtttgttatttttagaagggaaag----gtgaagaaaaaaagggtttatgcttatga 35301210  T

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Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 40224938 - 40225133
Alignment:
Q  7 aagagcgacatcagctatggaatgatacttctgcatctgaaagatttggatccaatgg-gtctacgacgatggatatgggcgaaaacattgatgtaatca 105  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||| ||||||||||||  ||||||||||||| ||||||||    
T  40224938 aagagcgacatcagcaatggagtgatacttctgcatctgaaggatttggatccaatggagtctccgacgatggatagcggcgaaaacattgctgtaatca 40225037  T
Q  106 acggcggaggataggtgagagagatgagaacatagagcgtcgacgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgcgtct 201  Q
     |||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  40225038 gcggcggaggagaggtgagagagatgagaacagagagcgtcgatgattgcgttggcagcggcgaactcgccgtgaaaccaagcgaggatagcgtct 40225133  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 40225173 - 40225234
Alignment:
Q  205 tgaagaggtgaggttgtgggacctacaacggtaggtcgatcggtgttggtgtttgatgttgg 266  Q
    |||||||| | |||||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  40225173 tgaagaggagtggttgtgggacctacaacggtaggtcgatcggtggtggtggttgttgttgg 40225234  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 40225299 - 40225350
Alignment:
Q  259 gatgttgggaagaacaaagatcttaggtcgaaatctggctttagaattgtcg 310  Q
    ||||| ||||||||||| ||| || | |||||||||||||||||||||||||    
T  40225299 gatgtcgggaagaacaatgatgttggttcgaaatctggctttagaattgtcg 40225350  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 259 - 399
Target Start/End: Original strand, 18106927 - 18107065
Alignment:
Q  259 gatgttgggaagaacaaagatcttaggtcgaaatctggctttagaattgtcgtttgtgaagtagtagaaacaaagatttg--tttgtttgttgtttttag 356  Q
    ||||| ||||||||||| ||| || |||||||||||| ||||| ||||||||   |||||  | |||||  |||| ||||  | ||||||||||||||||    
T  18106927 gatgtcgggaagaacaatgatgttgggtcgaaatctgtctttaaaattgtcgcaggtgaaacaatagaatgaaaggtttgggtgtgtttgttgtttttag 18107026  T
Q  357 aagggaaagaaaggtgaagagaaaaagggttcaggcttatgag 399  Q
    ||||||||    ||||||||||||||||||| |||||||||||    
T  18107027 aagggaaa----ggtgaagagaaaaagggtttaggcttatgag 18107065  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 18106802 - 18106862
Alignment:
Q  206 gaagaggtgaggttgtgggacctacaacggtaggtcgatcggtgttggtgtttgatgttgg 266  Q
    ||||||| | |||||||||||| |||| |||||||||||||| | ||||| ||| ||||||    
T  18106802 gaagaggagcggttgtgggacccacaatggtaggtcgatcggaggtggtggttgttgttgg 18106862  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 387
Target Start/End: Complemental strand, 14625633 - 14625533
Alignment:
Q  284 ggtcgaaatctggctttagaattgtcgtttgtgaagtagtagaaacaaagatt-tgtttgtttgttgtttttagaagggaaagaaaggtgaagagaaaaa 382  Q
    ||||| ||||||| ||||||||||||    |||||  | ||||||||||| || ||| |||||||||||||||||||||    |||||||||||||||||    
T  14625633 ggtcggaatctggatttagaattgtcagaggtgaaacaatagaaacaaaggttgtgtgtgtttgttgtttttagaaggg----aaaggtgaagagaaaaa 14625538  T
Q  383 gggtt 387  Q
    |||||    
T  14625537 gggtt 14625533  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 197
Target Start/End: Original strand, 37511752 - 37511795
Alignment:
Q  154 gcgttggcagcggcgaactcgccgtgaaaccaagcgaggattgc 197  Q
    |||||||| |||||||||||||||||||||||||| || |||||    
T  37511752 gcgttggcggcggcgaactcgccgtgaaaccaagcaagcattgc 37511795  T

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