View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4892_high_3 (Length: 448)

Name: NF4892_high_3
Description: NF4892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4892_high_3
NF4892_high_3
[»] chr4 (10 HSPs)
chr4 (236-358)||(27554069-27554191)
chr4 (333-440)||(27553950-27554057)
chr4 (253-438)||(27497743-27497920)
chr4 (384-440)||(27447356-27447412)
chr4 (63-165)||(27445235-27445332)
chr4 (256-322)||(27431871-27431937)
chr4 (247-321)||(27556962-27557037)
chr4 (253-319)||(27503432-27503499)
chr4 (253-323)||(27524031-27524102)
chr4 (253-326)||(27514400-27514474)


Alignment Details
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 236 - 358
Target Start/End: Complemental strand, 27554191 - 27554069
Alignment:
Q  236 atgtgaagcagataataacttaccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaagtacgtaccaatt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27554191 atgtgaagcagataataacttaccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaagtacgtaccaatt 27554092  T
Q  336 aatattaatgcatgaacaaatat 358  Q
    ||||||| |||||||||||||||    
T  27554091 aatattagtgcatgaacaaatat 27554069  T

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Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 333 - 440
Target Start/End: Complemental strand, 27554057 - 27553950
Alignment:
Q  333 attaatattaatgcatgaacaaatatgaggttcctcttgtattggacattgtttgaaagggtggggtacaatctaagacaaacaccacatgatatctcat 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27554057 attaatattaatgcatgaacaaatatgaggttcctcttgtattggacattgtttgaaagggtggggtacaatctaagacaaacaccacatgatatctcat 27553958  T
Q  433 cctatgct 440  Q
    ||||||||    
T  27553957 cctatgct 27553950  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 253 - 438
Target Start/End: Complemental strand, 27497920 - 27497743
Alignment:
Q  253 acttaccagctggagatcaacattatcaaaatgaagaaa-catgtcttagacatgtttgcaaaattatgaagtacgtaccaattaatattaatgcatgaa 351  Q
    ||||||||||| || ||||||||||||| |||||||||| |||||| ||  | ||||| |||| ||||| ||||  |||||||||||      |||||||    
T  27497920 acttaccagctagacatcaacattatcataatgaagaaaacatgtcctaagcctgtttacaaa-ttatggagtagctaccaattaat------gcatgaa 27497828  T
Q  352 caaatatgaggttcctcttgtattggacattgtttgaaagggtggggtacaatctaagacaaacaccacatgatatctcatcctatg 438  Q
     |||||||||||| |  ||||||| || || |||||| ||||| |||||||||||||||| |||||||||| |||||||||||||||    
T  27497827 -aaatatgaggttgcatttgtattcgagatagtttgatagggtagggtacaatctaagac-aacaccacattatatctcatcctatg 27497743  T

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Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 27447356 - 27447412
Alignment:
Q  384 tttgaaagggtggggtacaatctaagacaaacaccacatgatatctcatcctatgct 440  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  27447356 tttgaaagggtggggtacaatctaagacaaacacttcatgatatctcatcctatgct 27447412  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 27445235 - 27445332
Alignment:
Q  63 agccatagaacctaagggagacaagagcatataatagatcagtcacatggtattgtcttagatgattttctctcaattttctacgtcaaatgtcataata 162  Q
    ||||||||||| ||||||||||||   ||||||||||||||    |||||| ||||||||||||||||||||  ||||||| || |||||||||||||||    
T  27445235 agccatagaacttaagggagacaatgacatataatagatca----catggtgttgtcttagatgattttctc-aaattttcaacatcaaatgtcataata 27445329  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 256 - 322
Target Start/End: Original strand, 27431871 - 27431937
Alignment:
Q  256 taccagctggagatcaacattatcaaaatgaagaaacatgtcttagacatgtttgcaaaattatgaa 322  Q
    ||||||||||| |||||||||||||| |||||||||||||| | |  ||||||| ||||||||||||    
T  27431871 taccagctggacatcaacattatcaagatgaagaaacatgtataatgcatgtttacaaaattatgaa 27431937  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 27557037 - 27556962
Alignment:
Q  247 ataataacttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatga 321  Q
    ||||| |||||||||||||| ||||||| ||||| ||||||| |||||||||| |  ||||||| |||||||||||    
T  27557037 ataatcacttaccagctggaaatcaacactatcataatgaagaaaacatgtctaaagcatgtttacaaaattatga 27556962  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 319
Target Start/End: Original strand, 27503432 - 27503499
Alignment:
Q  253 acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattat 319  Q
    ||||| |||||||| ||||||||||||| ||||||| |||||||||| |  ||||||| |||||||||    
T  27503432 acttatcagctggacatcaacattatcataatgaagaaaacatgtctgaagcatgtttacaaaattat 27503499  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 27524031 - 27524102
Alignment:
Q  253 acttaccagctggagatcaacattatcaaaatgaag-aaacatgtcttagacatgtttgcaaaattatgaag 323  Q
    |||||||||||||| |||| |||||||| ||||||| |||||||||| |  ||||||| | |||||||||||    
T  27524031 acttaccagctggacatcagcattatcataatgaagaaaacatgtctgaagcatgtttacgaaattatgaag 27524102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 326
Target Start/End: Original strand, 27514400 - 27514474
Alignment:
Q  253 acttaccagctggagatcaacattatcaaaatgaagaaa-catgtcttagacatgtttgcaaaattatgaagtac 326  Q
    |||||| ||||||| |||| |||||||| |||| ||||| ||||||| |  ||||||| ||||||||||||||||    
T  27514400 acttactagctggacatcagcattatcataatgcagaaaacatgtctaaagcatgtttacaaaattatgaagtac 27514474  T

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