View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4892_high_4 (Length: 429)
Name: NF4892_high_4
Description: NF4892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4892_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 78 - 410
Target Start/End: Original strand, 39747836 - 39748187
Alignment:
| Q |
78 |
tattattaaataggcttgaatctcatcccaaaagatatagctcaaataacaaactacaaataactttgaaaccaacttca----------------taaa |
161 |
Q |
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| T |
39747836 |
tattattaaataggtttgaatctcatcctaagagatataacttaaataataaactacaaacaactttgaaaccaacttcaaccaatatagcctccataaa |
39747935 |
T |
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| Q |
162 |
ttcaaaataagtccagcaagtagtatttcctcctcttattgttgttggtttataagtttttagtgataaaaactagtagattcttgtataagaacaattt |
261 |
Q |
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| T |
39747936 |
ttcaaaataagtccagcaagtagtatttcctcctcttattgttgttggtttataagtttttagtgataaaaactagtagattcttgtataagaacaa-tt |
39748034 |
T |
|
| Q |
262 |
ttactaccgacatccacaatcnnnnnnnaaataaatatccacagcaacttggta----cagctgtaaacttgacgaagaaatgattattttctctttgaa |
357 |
Q |
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| T |
39748035 |
ttactaccgacatccacaatctctttttaaataaatatccacagcaacttggtatagctagctgtagacttgacgaagaaatggttattttctctttgaa |
39748134 |
T |
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| Q |
358 |
cccgattaagaaccaccaccctagattcctagcaatttttggccataacgaga |
410 |
Q |
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| T |
39748135 |
cccgattaagaaccaccaccctagattcttagcaatttttggccataacgaga |
39748187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 39747390 - 39747473
Alignment:
| Q |
3 |
tatcttaactatttcatggtgaatttagtatgccaaattagatttaagaactccactaagaatttattccaatgatattattaa |
86 |
Q |
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| T |
39747390 |
tatcataactatttcatggtgaatttagtatgccaaattagatttaagaactccactaagaatttattccaatgatattattaa |
39747473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 20982667 - 20982703
Alignment:
| Q |
121 |
aaataacaaactacaaataactttgaaaccaacttca |
157 |
Q |
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| T |
20982667 |
aaataacaaactacaaacaactttaaaaccaacttca |
20982703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 20995550 - 20995586
Alignment:
| Q |
121 |
aaataacaaactacaaataactttgaaaccaacttca |
157 |
Q |
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| T |
20995550 |
aaataacaaactacaaacaactttaaaaccaacttca |
20995586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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