View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4892_low_1 (Length: 706)
Name: NF4892_low_1
Description: NF4892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4892_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 634; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 13 - 689
Target Start/End: Complemental strand, 41756914 - 41756237
Alignment:
| Q |
13 |
aatattcaactgatcctaacaattatatgagcaacatttgatcgctattctcctcaatattgaagatcacgaccacggtaaactttggttagtaagtaat |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41756914 |
aatattcaactgatcctaacaattatatgagcaacatttgatcgctattctcctcaatattgaagatcacgaacacggtaaactttggttagtaagtaat |
41756815 |
T |
|
| Q |
113 |
tgttcctctcaaatagagaatgcatggactaagatttttaagagatagtgatgtacatacccaatcatggcaagaaagcatgaaatgatcagctccaagg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756814 |
tgttcctctcaaatagagaatgcatggactaagatttttaagagatagtgatgtacatacccaatcatggcaagaaagcatgaaatgatcagctccaagg |
41756715 |
T |
|
| Q |
213 |
cttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttttccttatgggactaaaatcatgagaatcgcgtacatagacaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756714 |
cttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttttccttatgggactaaaatcatgagaatcgcgtacatagacaa |
41756615 |
T |
|
| Q |
313 |
attggaccatctttgccacactaaaaggaaggaaaaatacgtgtgccttctcggggtctcttgttcgaaatcgatcattcatctcaatagcatggatgaa |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756614 |
attggaccatctttgccacactaaaaggaaggaaaaatacatgtgccttctcggggtctcttgttcgaaatcgatcattcatctcaatagcatggatgaa |
41756515 |
T |
|
| Q |
413 |
atttccttccatggagtatatacttttgcaaggtccattatggaaaaccggaggctccccttcttcatacacaaatactttgaattgtttctccatttct |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756514 |
atttccttccatggagtatatacttttgcaaggtccattatggaaaaccggaggctccccttcttcatacacaaatactttgaattgtttctccatttct |
41756415 |
T |
|
| Q |
513 |
aaataactcctgttatataacaaatagcaatttggcgaagtaaggtgagtgaatcgtatcaagccaatcaaatgtaattatgttagtaaaatgttttaga |
612 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41756414 |
aaataactcctgttatataacaaataacaatttggcgaagtaaggtgagtgaatcgtatcaagccaatcaaatgtaattatgttagtaaaatgttttaga |
41756315 |
T |
|
| Q |
613 |
tat-nnnnnnnntgttatgcaatatttacctgtgaaatgaattaggattgtgatacattggtcctgttggaacatagt |
689 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41756314 |
tataaaaaaaaatgttatgcaatatttacctgtgaaatgaattaggattgtgatacattggtcctgttggaacatagt |
41756237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 170 - 532
Target Start/End: Complemental strand, 41764699 - 41764337
Alignment:
| Q |
170 |
tacccaatcatggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggtt |
269 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||| | |||||||||||| |||||||||||||||||| |||||||| || ||| ||| |||| |
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| T |
41764699 |
tacccaatcatggcaagcaagtatgaaatgatcagctccatgacttcggttccaatagggatatttttcggaaaggacattgatgtagtctttgacggtt |
41764600 |
T |
|
| Q |
270 |
ttccttatgggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaaaatacgtgtgccttctcggggt |
369 |
Q |
| |
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|||||| | | | || || |||| || |||||||||||| | ||||||||| |||| |||||| ||| |||||||||||| ||||||||||| |||| |
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| T |
41764599 |
atccttaagaggtcataagcacgagagtctcgtacatagacataatggaccatcattgctacactataagaaaggaaaaatacatgtgccttctcagggt |
41764500 |
T |
|
| Q |
370 |
ctcttgttcgaaatcgatcattcatctcaatagcatggatgaaatttccttccatggagtatatacttttgcaaggtccattatggaaaaccggaggctc |
469 |
Q |
| |
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|| ||||| ||| |||||||||||| || || ||||||| |||||||||||||||||||| | |||||||||||| ||||||||| |||||||| |
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| T |
41764499 |
cttttgttatgaatttatcattcatctccatttgattgatgaaaattccttccatggagtatatatctctgcaaggtccatcatggaaaactggaggctc |
41764400 |
T |
|
| Q |
470 |
cccttcttcatacacaaatactttgaattgtttctccatttctaaataactcctgttatataa |
532 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||| |||| |
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|
| T |
41764399 |
cccttcttcgtacacaaatactttgaaccgtttctccatttctaagtaactcctgttaaataa |
41764337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 634 - 689
Target Start/End: Complemental strand, 41764250 - 41764195
Alignment:
| Q |
634 |
tatttacctgtgaaatgaattaggattgtgatacattggtcctgttggaacatagt |
689 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||||||||||||||||||| |
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| T |
41764250 |
tatttacctgtgaaataagttaggtttgtgatacattggtcctgttggaacatagt |
41764195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 171 - 525
Target Start/End: Original strand, 26973807 - 26974161
Alignment:
| Q |
171 |
acccaatcatggcaagaaagcatgaaatgatcagctccaaggcttcggttccaaaagggatatttttcggaaaccacattgatataatctgtgatggttt |
270 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||||||||||||| |||||| | ||||||||| | | || |||||||||||||| |||| |||| |
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|
| T |
26973807 |
acccagtcatggcaagctagcatgaaatgatcagctccaaggcttctattccaatatggatattttccagcaatgacattgatataatccgtgacagttt |
26973906 |
T |
|
| Q |
271 |
tccttatgggactaaaatcatgagaatcgcgtacatagacaaattggaccatctttgccacactaaaaggaaggaaaaatacgtgtgccttctcggggtc |
370 |
Q |
| |
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| ||||| || | ||| ||| |||| || | || ||| || ||| |||||| | || ||||||| || ||||||||| | |||||||| |||| || || |
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|
| T |
26973907 |
ttcttataggtccaaagtcacgagagtcccttaaataaacgaatcggaccaacattaccacactgaacggaaggaaatagacgtgtgctttctgaggatc |
26974006 |
T |
|
| Q |
371 |
tcttgttcgaaatcgatcattcatctcaatagcatggatgaaatttccttccatggagtatatacttttgcaaggtccattatggaaaaccggaggctcc |
470 |
Q |
| |
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||| |||| |||| | ||||||| ||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
26974007 |
tctagttctaaattggtcattcaattcaatagcatgaatgaagttcccttccatggagtatatgcttttgcaaggtccattgtgaaaaaccggaggctcc |
26974106 |
T |
|
| Q |
471 |
ccttcttcatacacaaatactttgaattgtttctccatttctaaataactcctgt |
525 |
Q |
| |
|
|||||||| || || ||||||||||| ||||||||||||||||| || ||||||| |
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|
| T |
26974107 |
ccttcttcgtagacgaatactttgaactgtttctccatttctaagtagctcctgt |
26974161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 387 - 432
Target Start/End: Original strand, 26980205 - 26980250
Alignment:
| Q |
387 |
tcattcatctcaatagcatggatgaaatttccttccatggagtata |
432 |
Q |
| |
|
||||||| || |||| |||||||||| ||||||||||||||||||| |
|
|
| T |
26980205 |
tcattcaacttaataacatggatgaagtttccttccatggagtata |
26980250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 36806159 - 36806120
Alignment:
| Q |
170 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36806159 |
tacccaatcatgacaagaaagcatgaaatgatcagctcca |
36806120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 36515067 - 36515106
Alignment:
| Q |
170 |
tacccaatcatggcaagaaagcatgaaatgatcagctcca |
209 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
36515067 |
tacccaatcatgacaagaaagcatgaaatggtcagctcca |
36515106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 324 - 360
Target Start/End: Original strand, 47728994 - 47729030
Alignment:
| Q |
324 |
tttgccacactaaaaggaaggaaaaatacgtgtgcct |
360 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| |
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|
| T |
47728994 |
tttgcaacactaaaaggaaggaaaaatatgtgtgcct |
47729030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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