View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4892_low_2 (Length: 539)
Name: NF4892_low_2
Description: NF4892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4892_low_2 |
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| [»] scaffold1234 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 44578155 - 44577631
Alignment:
| Q |
18 |
gtattcatgaaatgcttatagggaagtagcaaatacatttaatgggaaatatgggaaagcttcaatgttgtttaaagcaatactactaccaaggaatctg |
117 |
Q |
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| T |
44578155 |
gtattcatgaaatgcttatagggaagtaacaaatacatttaatgggaaatatgggaaagcttcaatgttgtttaaagcaatactactaccaaggaatctg |
44578056 |
T |
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| Q |
118 |
cattgataagctacgatatagttaatgctgatctaataagaacttaatgaagggagatttgaatttcgaatttgaataattcccgccaaaggtttaggtt |
217 |
Q |
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| T |
44578055 |
cattgataagctacgatatagttaatgctgatctaataagaacttaatgaagagagatttgaatttcgaatttgaataattcccgccaaaggtttag-tt |
44577957 |
T |
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| Q |
218 |
tagggtttcccgggtagggtttgcattgtaccttaggattagatattaagat------atttgatatttgataaagagtaatggtgttaataatatatat |
311 |
Q |
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| T |
44577956 |
tagggtttcccgattagggtttgcattgtaccttaggattagatattaagattaagatatttgatatttgataaagagtaatggtgttaataatatatgt |
44577857 |
T |
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| Q |
312 |
accagttgcagcagttgaaacgtattcagaattctctgagggaaactgtgtgtcattcaccttagcaagactatcaatttccacataacattttgtatct |
411 |
Q |
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| T |
44577856 |
accagttgcagcagttgaaacgtattcagaattctctgagggaaactgtgtgtcattcaccttagcaagactatcaatttccacataacattttgtatct |
44577757 |
T |
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| Q |
412 |
gaaaacagcaatcatttacagttttattggtgacggtgatactttgtcaggggaatacaattttcactgtatagcttttttaccaaagacttaccattgt |
511 |
Q |
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| T |
44577756 |
gaaaacagcaatcatttacagttttattggtgacagtgatactttgtcaggggaatacaattttcactgtatagcttttttaccaaagacttaccattgt |
44577657 |
T |
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| Q |
512 |
tgtaatgatggttgtgatgatgtcca |
537 |
Q |
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| T |
44577656 |
tgtaatgatggttgtaatgatgtcca |
44577631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 316 - 436
Target Start/End: Complemental strand, 44580009 - 44579895
Alignment:
| Q |
316 |
gttgcagcagttgaaacgtattcagaattctctgagggaaactgtgtgtcattcaccttagcaagactatcaatttccacataacattttgtatctgaaa |
415 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| |||| ||||| || |
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| T |
44580009 |
gttgcagcagctgaaacgtattcagaattctctaagggaaactgtgtgtcattcaccttaggaagaccatcaatttccaca------tttggatctgcaa |
44579916 |
T |
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| Q |
416 |
acagcaatcatttacagtttt |
436 |
Q |
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| T |
44579915 |
acagaaatcatttacagtttt |
44579895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1234 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1234
Description:
Target: scaffold1234; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 266
Target Start/End: Complemental strand, 1155 - 1085
Alignment:
| Q |
193 |
ataattcccgccaaaggtttaggtttagggtttcccgggtagggtttgcattgtaccttaggattagatattaa |
266 |
Q |
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| T |
1155 |
ataattcccgccaa-ggtttaggtttagggttttccaagtagtgtgtg--ttgtaccttaggattatatattaa |
1085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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