View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4892_low_3 (Length: 478)

Name: NF4892_low_3
Description: NF4892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4892_low_3
NF4892_low_3
[»] chr5 (1 HSPs)
chr5 (18-478)||(5684058-5684514)


Alignment Details
Target: chr5 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 478
Target Start/End: Original strand, 5684058 - 5684514
Alignment:
Q  18 gtatcgacaaagggagataagggaagattgacaacttcaatttctactatcttgttgaaagtgttcgcgggaaaattgaaaagttagatctgaaccgcag 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  5684058 gtatcgacaaagggagataagggaagattga-aacttcaatttctactatcttg---aaagtgttcgcgggaaaattgaaaagttagatctgaaccgcag 5684153  T
Q  118 gattgatcggatggatgaggttttctttggatatgtgactgcggcggcattttataatcagcagagaatctgcacaccttatccaaccctgtccaaaacc 217  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  5684154 gattgatcggatggctgaggttttctttgaatatgtgactgcggcggcattttattaacagcagagaatctgcacaccttatccaaccctgtccaaaacc 5684253  T
Q  218 cagcaacacaaacccccttcatctacaatgtcaaaaccaatacaaaaatccacaaatcaatcccattaatcttcacaaaccctccaattttccactatct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5684254 cagcaacacaaacccccttcatctacaatgtcaaaaccaatacaaaaatccacaaatcaatcccattaatcttcacaaaccctccaattttccactatct 5684353  T
Q  318 acatttcccatcacaattcaatccccttcaaacaacaacaatggagctctcatcctctttttcactctccccaaaaccaactaacttctcattctcatcc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5684354 acatttcccatcacaattcaatccccttcaaacaacaacaatggaactctcatcctctttttcactctccccaaaaccaactaacttctcattctcatcc 5684453  T
Q  418 tcattctctcctttccccatccaaatcctaatcaaaaacaccaaatcccgaaactaccctc 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5684454 tcattctctcctttccccatccaaatcctaatcaaaaacaccaaatcccgaaactaccctc 5684514  T

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