View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4892_low_4 (Length: 477)
Name: NF4892_low_4
Description: NF4892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4892_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 464
Target Start/End: Original strand, 51851791 - 51852236
Alignment:
| Q |
19 |
actaaaacagctatctcaatccagtttcatgatgcaacccgatagctgcatttatttgtttatttcttttatataattcatttaattcctaatcatacaa |
118 |
Q |
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| T |
51851791 |
actaaaacagctatctcaatccagtttcatgatgcaacccgatagctgcatttatttgtttatttctttcatataattcatttaattcctaatcatacaa |
51851890 |
T |
|
| Q |
119 |
atggtaattgtaataaaaaatttattcaaattaaaacaacttttcatgttatctatctttttcacaaaaaattgcttccacttgtcaaataagattcatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51851891 |
atggtaattgtaataaaaaatttattcaaattaaaacaacttttcatgttatctatctttttcacaaaaaattgcttccacttgtcaaataagattcatc |
51851990 |
T |
|
| Q |
219 |
atttagatcctggattacctgtgatcttattaatagcacatggaacactgttacttaaaatagaaatcattaattaagagatatgtagctagcatctgaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
51851991 |
atttagatcctggattacctgtgatcttattaatagcacatggaacactgttacttaaaatagaaatcattgattaagagatatgtagctagcatctgaa |
51852090 |
T |
|
| Q |
319 |
taatgttcaaggtccttttgtctagaaattgaacatgaaatgcaattgtactgtacaatactttgatttgaacctttagtttaaaaatgactttcttatt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51852091 |
taatgttcaaggtccttttgtctagaaattgaacatgaaatgcaattgtactgtacaatactttgatttgaacctttagtttaaaaatgagtttcttatt |
51852190 |
T |
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| Q |
419 |
tgattcttggatctgtacctttaacttgcatattatttaacctatg |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51852191 |
tgattcttggatctgtacctttaacttgcatattatttaacctatg |
51852236 |
T |
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