View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4893-Insertion-1 (Length: 1000)
Name: NF4893-Insertion-1
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4893-Insertion-1 |
 | |
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| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 854; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 854; E-Value: 0
Query Start/End: Original strand, 8 - 1000
Target Start/End: Complemental strand, 19124495 - 19123504
Alignment:
| Q |
8 |
ctagtaactaaacatgtgatatctttaacacatgctnnnnnnntggcgtgcattattatgcaatttcaacttatatcatctaattgtatgtcgtctaact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19124495 |
ctagtaactaaacatgtgatatctttaacacatgctaaaaaaatggcgtgcattattatgcaatttcaacttatatcatctaattgtatgtcgtctaact |
19124396 |
T |
|
| Q |
108 |
taacacataccagcaatatgataacgaatgaattatgacatccggtgttgaccaatttcagtagaaaaaacaattagggcttaaacaagttgaaactttc |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19124395 |
taacacataccagcaatatgataatgaatgaattatgacatccggtgttgaccaatttcagtagaaaaaacaattagggcttaaacaagttgaaactttc |
19124296 |
T |
|
| Q |
208 |
atatcgtttctatagtgatttcgcaagaaaggccaacagagtgcacactattaaaaaggaaaattgagtacactcagctaaacctaggatcaataactaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19124295 |
atatcgtttctatagtgatttcgcaagaaaagccaacagagtgcacactattaaaaaggaaaattgaatacactcagctaaacctaggatcaataactaa |
19124196 |
T |
|
| Q |
308 |
ctaagactcgtcagtaatcaattactttttacatgattgccttcttcagtcgttggtgcagatgttttacgaaataaaagattgagctgatcaaggaaaa |
407 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19124195 |
ctaagactcgtcagtcatcaattactttttacatgattgccttcttcagtcgttggtgcagatgttttacgaaataaaagattgagctgatcaaggaaaa |
19124096 |
T |
|
| Q |
408 |
acaaactcttcgtttgctccaactgctggcgttctttttccatcagcacgtctaaatcctcaaaattgataagcttgtcctggatatttttcatctgaac |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19124095 |
acaaactcttcgtttgctccaactgctggcgttctttttccatcagcacgtctaaatcctcaaaattgataagcttgtcctggatatttttcatctgaac |
19123996 |
T |
|
| Q |
508 |
ttctataaccccagaaatagctttttccacatctgattcttccttctcaagctgtaaatttgcatccaatagagatccttggatagaatctgaagcatta |
607 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19123995 |
ttctataacctcagaaatagctttttccacatctgattcttccttctcaagctgtaaatttgcatccaatagagatccttggatagaatctgaagcatta |
19123896 |
T |
|
| Q |
608 |
ccaccatcggatgtaactgaagcatcttgctgcaatgtattccttagaaatgatcggtaattaattcgctatagtaatagcttgctgagcaaccctcttc |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19123895 |
ccaccatcggatgtaactgaagcatcttgctgcaatgtattccttagaaatgatcggtaattaattcgctatagtaatagcttgctgagcaaccctcttc |
19123796 |
T |
|
| Q |
708 |
caatcagtttcggattcacattcagcatcaacgggaggctttaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctac |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19123795 |
caatcagtttcggattcacattcagcatcaacgggaggctttaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctac |
19123696 |
T |
|
| Q |
808 |
caacaacttgatgaggaaccctcttccaatcatccccgaaatttgtaatagcttcaaggaggattcagtgtttcctcctcagtccattcnnnnnnnngtc |
907 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||| |
|
|
| T |
19123695 |
caacaacttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaa-gaagattcagtgtttcctcctcagtccattc-tttttttgtc |
19123598 |
T |
|
| Q |
908 |
tcctcgcttatctccactctctgaaattctgta-tactcatacccaattcgaatag-ttccacaaataaaaca-ctcacacacacggtcatattat |
1000 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||| |||||||| |||| |||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
19123597 |
tcctcgcttatctccactctcttgaattctgtattactcata-ccaattcg-atagtttccacaaataaaacacctcacacacaacgtcatattat |
19123504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 19109208 - 19109018
Alignment:
| Q |
8 |
ctagtaactaaacatgtgatatctttaacacatgctnnnnnnntggcgtgcattattatgcaatttcaacttatatcatctaattgtatgtcgtctaact |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19109208 |
ctagtaactaaacatgtgatatctttaacacatgctaaaaaaatggtgtgcattattatgcaatttcaactgatatcatctaattgtatgtcgtctaact |
19109109 |
T |
|
| Q |
108 |
taacacataccagcaatatgataacgaatgaattatgacatccggtgttga-------ccaatttcagtagaaaaaacaattagggcttaa |
191 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
19109108 |
taacacataccagcaatatgataatgaatgaattatgacatcaggtgtttaccacatgccaatttcagtagaaaaaacaattagggcttaa |
19109018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 197 - 674
Target Start/End: Complemental strand, 36754103 - 36753626
Alignment:
| Q |
197 |
ttgaaactttcatatcgtttctatagtgatttcgcaagaaaggccaacagagtgcacactattaaaaaggaaaattgagtacactcagctaaacctagga |
296 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
36754103 |
ttgaaactttcataccgtttctatagtgattttgcaagaaaagcaaacagagtgcacactattaaaaaggaaaattgaatacactcagctaaacctaaga |
36754004 |
T |
|
| Q |
297 |
tcaataactaactaagactcgtcagtaatcaattactttttacatgattgccttcttcagtcgttggtgcagatgttttacgaaataaaagattgagctg |
396 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36754003 |
tcaatagctaactaagactcgtcagtcatcaattactttttacatgattgccttctccggtcgttggtgcagatgttttacgaaataaaagattgagctg |
36753904 |
T |
|
| Q |
397 |
atcaaggaaaaacaaactcttcgtttgctccaactgctggcgttctttttccatcagcacgtctaaatcctcaaaattgataagcttgtcctggatattt |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36753903 |
atcaaggaaaaacaaactcttcgtttgctccaactgctggcgttctttttccatcagcacgtctaaatcctcaaaattgataagcttgtcctggatattt |
36753804 |
T |
|
| Q |
497 |
ttcatctgaacttctataaccccagaaatagctttttccacatctgattcttccttctcaagctgtaaatttgcatccaatagagatccttggatagaat |
596 |
Q |
| |
|
||||||||||| ||||||||| || ||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36753803 |
ttcatctgaacgtctataacctcataaatatctttttccacgtctgattcttccttctcaagctgtaaatttgcacgcaatagagatccttggatagaat |
36753704 |
T |
|
| Q |
597 |
ctgaagcattaccaccatcggatgtaactgaagcatcttgctgcaatgtattccttagaaatgatcggtaattaattc |
674 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
36753703 |
ctgaagcattaccaccatcggatgcaacagaagcatcttgctgcaatgtattccttggaaatgaccggtaattaattc |
36753626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 715 - 950
Target Start/End: Complemental strand, 36753454 - 36753220
Alignment:
| Q |
715 |
tttcggattcacattcagcatcaacgggaggctttaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaac |
814 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36753454 |
tttcggattcccattcagcatcaacgggaggcttcaactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaac |
36753355 |
T |
|
| Q |
815 |
ttgatgaggaaccctcttccaatcatccccgaaatttgtaatagcttcaaggaggattcagtgtttcctcctcagtccattcnnnnnnnngtctcctcgc |
914 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
36753354 |
ttgatgagaaaccctcttccaatcatccccgaaatttgtaatagcttcaa-gaagattcagtgtttcctcctcagtccattc-attttttgtctcctcac |
36753257 |
T |
|
| Q |
915 |
ttatctccactctctgaaattctgta-tactcatacc |
950 |
Q |
| |
|
||||||||||||||| ||||| |||| |||||||||| |
|
|
| T |
36753256 |
ttatctccactctcttaaattttgtattactcatacc |
36753220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 7e-92; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 7e-92
Query Start/End: Original strand, 308 - 503
Target Start/End: Original strand, 54291656 - 54291851
Alignment:
| Q |
308 |
ctaagactcgtcagtaatcaattactttttacatgattgccttcttcagtcgttggtgcagatgttttacgaaataaaagattgagctgatcaaggaaaa |
407 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54291656 |
ctaagacttgtcagtcatcaattcctttttacatgattgccttctccggtcgttggtgcagatgttttacgaaataaaagattgagctgatcaaggaaaa |
54291755 |
T |
|
| Q |
408 |
acaaactcttcgtttgctccaactgctggcgttctttttccatcagcacgtctaaatcctcaaaattgataagcttgtcctggatatttttcatct |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54291756 |
acaaactcttcgtttgctccaactgctggcgttctttttccattagcacgtctaaatcctcaaaattgataagcttgtcctggatatttttcatct |
54291851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 750 - 1000
Target Start/End: Original strand, 54292881 - 54293130
Alignment:
| Q |
750 |
aactgatcgccaaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgaggaaccctcttccaatcatccccgaaat |
849 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
54292881 |
aactgatcaccaaaaggaagctctaaaaaacgagcaacgcattccttgtcggtcctaccaacaacttgatgagcaaccctcttccaatcatcaccgaaat |
54292980 |
T |
|
| Q |
850 |
ttgtaatagcttcaaggaggattcagtgtttcctcctcagtccattcnnnnnnnngtctcctcgcttatctccactctctgaaattctgta-tactcata |
948 |
Q |
| |
|
| ||||||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
54292981 |
tcgtaatagcttcaa-gaagattcagtgtttccttctcagtccattc-atttttcgtctcctcgcttatctccactctcttgaattctgtattactcata |
54293078 |
T |
|
| Q |
949 |
cccaattcgaatagttccacaaataaaaca-ctcacacacacggtcatattat |
1000 |
Q |
| |
|
||||||||| | |||||| ||||||||| ||| |||||| |||||||||| |
|
|
| T |
54293079 |
-ccaattcgataatttccacgaataaaacacctcgcacacaacgtcatattat |
54293130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 502 - 634
Target Start/End: Original strand, 54291946 - 54292078
Alignment:
| Q |
502 |
ctgaacttctataaccccagaaatagctttttccacatctgattcttccttctcaagctgtaaatttgcatccaatagagatccttggatagaatctgaa |
601 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
54291946 |
ctgaacttctgtaacctcagaaattgctttttccacgtctgattcttccttctcaagctgtaaatttgcacgcaataaagatccttggatagaatctgaa |
54292045 |
T |
|
| Q |
602 |
gcattaccaccatcggatgtaactgaagcatct |
634 |
Q |
| |
|
||||||||||||| ||||| ||| | ||||||| |
|
|
| T |
54292046 |
gcattaccaccattggatgcaacagcagcatct |
54292078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 54291585 - 54291658
Alignment:
| Q |
221 |
agtgatttcgcaagaaaggccaacagagtgcacacta-ttaaaaaggaaaattgagtacactcagctaaaccta |
293 |
Q |
| |
|
||||||||||||||||| || ||| ||||||| |||| ||||||||||||||||| | |||||||||||||||| |
|
|
| T |
54291585 |
agtgatttcgcaagaaaagcaaacggagtgcagactaattaaaaaggaaaattgaatgcactcagctaaaccta |
54291658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 712 - 757
Target Start/End: Original strand, 54292786 - 54292831
Alignment:
| Q |
712 |
cagtttcggattcacattcagcatcaacgggaggctttaactgatc |
757 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
54292786 |
cagtttcggattcacattcagcagcaacgggaggcttcaactgatc |
54292831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 674
Target Start/End: Original strand, 54292269 - 54292310
Alignment:
| Q |
633 |
cttgctgcaatgtattccttagaaatgatcggtaattaattc |
674 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
54292269 |
cttgctgcaatgtattccttggaaatgaccggtaattaattc |
54292310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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