View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4893-Insertion-11 (Length: 218)
Name: NF4893-Insertion-11
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4893-Insertion-11 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 49158357 - 49158147
Alignment:
| Q |
8 |
tactgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacctctgtccaagccatctatgtgcctgctgatgacttgacagat |
107 |
Q |
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| T |
49158357 |
tactgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacctctgtccaagccatctatgtgcctgctgatgacttgacagat |
49158258 |
T |
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| Q |
108 |
cctgctcctgctaccacctttgctcacttggatgctacgacggtgttgtcaagacaggttcgatcattatgttaatattaattaattaaactaaaatggc |
207 |
Q |
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| T |
49158257 |
cctgctcctgctaccacctttgctcacttggatgctacgacggtgttgtcaagacaggttcgatcattatgttaatattaattaattaaactaaaatggc |
49158158 |
T |
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| Q |
208 |
aattgtgatga |
218 |
Q |
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| T |
49158157 |
aattgtgatga |
49158147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 49153427 - 49153246
Alignment:
| Q |
8 |
tactgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacctctgtccaagccatctatgtgcctgctgatgacttgacagat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |
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| T |
49153427 |
tactgatcttggaggtcttcaagagcgtattacaaccaccaagaagggttcaattacatctgtccaggctatctatgtgcctgctgatgacttgacagat |
49153328 |
T |
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| Q |
108 |
cctgctcctgctaccacctttgctcacttggatgctacgacggtgttgtcaagacaggttcgatcattatgttaatattaattaa |
192 |
Q |
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| T |
49153327 |
cctgctcctgctaccacctttgctcacttggatgctacaacagtgttgtctagacaggtt---tgattatgttactattaattaa |
49153246 |
T |
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