View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4893-Insertion-2 (Length: 974)
Name: NF4893-Insertion-2
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4893-Insertion-2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 36 - 331
Target Start/End: Original strand, 2166172 - 2166471
Alignment:
| Q |
36 |
atggtggtcatctagtctcccataaggcggaggaagacatcgagggttgactcatcttcgatgttgtaatcggcaagggtcatgctgtcttgtagtgacc |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2166172 |
atggtggtcatctagtctcccataaggcggaggaagacgtcgagggttgactcatcttcgatgttgtaatcggcaagggtcatgctgtcttgtagtgacc |
2166271 |
T |
|
| Q |
136 |
taccgccaaacaacagattttgttggtgcacttggaaatcttgcttgtcaacaattctctccttcacactgagtattgtgtctgagctcttaacctccaa |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2166272 |
taccgccaaacaacagattttgttggtgcacttggaaatcttgcttgtcaacaattctctccttcacactgagtattgtgtctgagctcttaacctccaa |
2166371 |
T |
|
| Q |
236 |
gtggattttatttccattctgggccataatgaagatttccatctgcatcataattagcaagacattaatcaatgatac----atgcaacataaaatcaaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2166372 |
gtggattttatttccattctgggccataatgaagatttccatctgcatcataattagcaagacattaatcaatgatacatatatgcaacataaaatcaaa |
2166471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 541 - 974
Target Start/End: Original strand, 2166470 - 2166905
Alignment:
| Q |
541 |
aatggattttcactcttattagagcacaacaggaaaaataaattcatgatcaaatcaatacaagaaaatttgagactgatatatcaatgactgagccaaa |
640 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2166470 |
aatggattttcgctcttattagagcacgacaggaaaaataaattcatgatcaaatcaatacaagaaaatttgagactgatatatcaatgactgagccaaa |
2166569 |
T |
|
| Q |
641 |
aatagaaaacaataacaacttttttcg-catttcaacactggtgaatttgagatgnnnnnnnnntgctagagtataaattcaaaacataaaggaatataa |
739 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2166570 |
aatagaaaacaataacaactttttttggcatttcaaaactggtgaatttgagat--aaaaaaaatgctagagtataaattcaaaacataaaggaatataa |
2166667 |
T |
|
| Q |
740 |
taagactttaacaaaatgcaaaatatcaaagcaaagaatcaaatggaattggaatcagaagcaacctttggtgtgtttttggctgctaggttaagttgtt |
839 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2166668 |
taagactttaacaaaatgcaaaatatcaaagcaaagaatcaaatggaattggaatcagaaggaacctttggtgtgtttttggctgctaggttaagttgtt |
2166767 |
T |
|
| Q |
840 |
cttctggtgacnnnnnnnnnnnccaaagttaatataaatccc-aaccctagaaatggttggcgattatgggct-gatttttggagatagggcccaattta |
937 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| | |
|
|
| T |
2166768 |
cttctggtg-ccaaaaaaaaaaccaaagttaatataaatcccaaaccctagaaatggtt-gcgattatgggctggatttttggagata-ggcccaattaa |
2166864 |
T |
|
| Q |
938 |
aacttcaaa----cacatttattacttgcaccttctttttt |
974 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
2166865 |
aacttcaaaaaccaacatttattacttgcacctcctttttt |
2166905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 556 - 614
Target Start/End: Complemental strand, 37577442 - 37577383
Alignment:
| Q |
556 |
ttattagagcacaacagga-aaaataaattcatgatcaaatcaatacaagaaaatttgag |
614 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37577442 |
ttattacagcacaacagggtaaaagaaattcatgatcaaatcaataaaagaaaatttgag |
37577383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 434 - 472
Target Start/End: Complemental strand, 14690861 - 14690823
Alignment:
| Q |
434 |
agtccctaactcattatataagagggaataatttgtccc |
472 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
14690861 |
agtccctaactcattatattagagggactaatttgtccc |
14690823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 704 - 750
Target Start/End: Complemental strand, 16757162 - 16757116
Alignment:
| Q |
704 |
tgctagagtataaattcaaaacataaaggaatataataagactttaa |
750 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
16757162 |
tgctagagtataaattcaaaacataaaagataataataagactttaa |
16757116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 657
Target Start/End: Complemental strand, 17591686 - 17591621
Alignment:
| Q |
592 |
aaatcaatacaagaaaatttgagactgatatatcaatgactgagccaaaaatagaaaacaataaca |
657 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||| ||||| |||||||||||||||| ||||| |
|
|
| T |
17591686 |
aaatcaataatagaaaatttgagattgatatttcaagaactgatccaaaaatagaaaacactaaca |
17591621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 659
Target Start/End: Complemental strand, 28475146 - 28475079
Alignment:
| Q |
592 |
aaatcaatacaagaaaatttgagactgatatatcaatgactgagccaaaaatagaaaacaataacaac |
659 |
Q |
| |
|
|||||| || |||||||||||||||||| || |||| ||| | |||||||||||||||| ||||||| |
|
|
| T |
28475146 |
aaatcagtaaaagaaaatttgagactgacatttcaagaactaatccaaaaatagaaaacactaacaac |
28475079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 642
Target Start/End: Complemental strand, 32858631 - 32858564
Alignment:
| Q |
575 |
aaaataaattcatgatcaaatcaatacaagaaaatttgagactgatatatcaatgactgagccaaaaa |
642 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||| ||||||| |||| |||| ||||| ||||||| |
|
|
| T |
32858631 |
aaaagaaattcatgatcaaatcaatataagaaaaattgagaccgatacttcaaaaactgatccaaaaa |
32858564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 709 - 747
Target Start/End: Original strand, 32655992 - 32656030
Alignment:
| Q |
709 |
gagtataaattcaaaacataaaggaatataataagactt |
747 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
32655992 |
gagtataaattcaaaacataaaagaaaataataagactt |
32656030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 556 - 613
Target Start/End: Complemental strand, 32768231 - 32768173
Alignment:
| Q |
556 |
ttattagagcacaaca-ggaaaaataaattcatgatcaaatcaatacaagaaaatttga |
613 |
Q |
| |
|
|||||| ||||||||| || |||| ||||| ||||||||||||||| |||||||||||| |
|
|
| T |
32768231 |
ttattacagcacaacatggcaaaagaaattaatgatcaaatcaataaaagaaaatttga |
32768173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University