View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4893-Insertion-3 (Length: 805)
Name: NF4893-Insertion-3
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4893-Insertion-3 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 715; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 715; E-Value: 0
Query Start/End: Original strand, 7 - 805
Target Start/End: Complemental strand, 42688008 - 42687206
Alignment:
| Q |
7 |
atttatcatacctttaacgacatgaggtgttggaaacttgaggacattttcaccatcagtacgaaataattctttgatcacaggtaaggggctaattgtg |
106 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42688008 |
atttatcatacctttaacgacatgcggtgttggaaacttgaggacattttcaccatcagtacgaaataattctttgatcacaggtaaggggctaattgtg |
42687909 |
T |
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| Q |
107 |
ctgattacatctagaggtagcttaattccaccttcaaagaggtcacgcacatcttggaaactatcaaactcgcgtggtgtaaaattcaaatcaaatgcag |
206 |
Q |
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| T |
42687908 |
ctgattacatctagaggtaacttaattccaccttcaaagaggtcacgcacatcttggaaactatcaaactcgcgcggtgtaaaattcaaatcaaatgcag |
42687809 |
T |
|
| Q |
207 |
attcgaatgcgggtaatacgttttgagatacagattttattccatatgtgagaaagtctgaggacttcaagtgaccaaaattttcatctcttggaacata |
306 |
Q |
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| T |
42687808 |
attcgaatgcgggtaatacgttttgagatacagattttattccatatgtgagaaagtctgaggacttcaagtgaccaaaattttcatctcttggaacata |
42687709 |
T |
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| Q |
307 |
tatttctgtagctggtttctcagaatttggatctgttcgaaataagacaaaagcaagacacatatgttattagggaaacaaatttgaaaatgacaactta |
406 |
Q |
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| T |
42687708 |
tatttctgtagctggtttctcagaatttggatctgttcgaaataagacaaaagcaagacacatatgttattaggaaaacaaatttgaaaatgacaactta |
42687609 |
T |
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| Q |
407 |
gtcatcnnnnnnnnnnnnntaaggatcatagcacaaatgcctagctatagctattttcacaagcagaagttaaaattgaactcttccaact----aatat |
502 |
Q |
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| T |
42687608 |
gtcatcaaaaaaataaaaataaggatcatagcacaaatgcctagctatagctattttcacaagcagaagttaaaattgaactcttccaactaataaatat |
42687509 |
T |
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| Q |
503 |
attattttttaaaatacaactacgagtttaatttctatgaaccgaccaaataaaactttttatagatacactcaatcaaatcacagtatcacactataac |
602 |
Q |
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| T |
42687508 |
attattttttaaaatacaactacgagtttaattcctatgaaccgaccaaataaaactttttatagatacactcaatcaaatcacagtatcacactataac |
42687409 |
T |
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| Q |
603 |
atcactttgttacgtttgttactaaaaattgaactaacctttccttgttggatatcgacctgtccttcccctgcgagggtaaggatgtgtgctagaccct |
702 |
Q |
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| T |
42687408 |
atcactttgttacgtttgttactaaaaattgaactaacctttccttgttggatatcgacctgtccttcccctgcgagggtaaggatgtgtgctagaccct |
42687309 |
T |
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| Q |
703 |
ccaagaacagggcgagcaagactttcaccgtgatctggatttcctaaatcattgaagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctg |
802 |
Q |
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| T |
42687308 |
ccaagaacagggcgagcaaaactttcaccgtgatctggattgcctaaatcattgtagacatcgtaatcgtagatcctttcatgtaacttgcgctctcctg |
42687209 |
T |
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| Q |
803 |
ttc |
805 |
Q |
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||| |
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| T |
42687208 |
ttc |
42687206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 667 - 782
Target Start/End: Original strand, 42694313 - 42694428
Alignment:
| Q |
667 |
cttcccctgcgagggtaaggatgtgtgctagaccctccaagaacagggcgagcaagactttcaccgtgatctggatttcctaaatcattgaagacatcgt |
766 |
Q |
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||||||| ||||| ||||||| |||| |||||| ||||||||||| |||||| || | ||||| | || |||||||||||||||||| ||||||| | |
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| T |
42694313 |
cttccccgacgaggataaggatatgtgtcagacccgccaagaacaggacgagcatgattgtcacctttctccggatttcctaaatcattgtagacatcat |
42694412 |
T |
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| Q |
767 |
aatcgtagatcctttc |
782 |
Q |
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|||| ||||| ||||| |
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| T |
42694413 |
aatcatagattctttc |
42694428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 42694045 - 42694120
Alignment:
| Q |
227 |
ttttgagatacagattttattccatatgtgagaaagtctgaggacttcaagtgaccaaaattttcatctcttggaa |
302 |
Q |
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| T |
42694045 |
ttttgagatactgctttcagtccataagtaagaaaatctgatgatttcaagtgaccaaaagcttcatctcttggaa |
42694120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 6e-24; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 26 - 306
Target Start/End: Complemental strand, 9603677 - 9603394
Alignment:
| Q |
26 |
acatgaggtgttggaaacttgaggacattttcaccatcagtacgaaataattctttgatcacaggtaaggggctaattgtgctgattacatctagaggta |
125 |
Q |
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||||| |||| ||||||||||||||| | |||||||||||| || || | ||| |||| || |||||||| || ||| |||| | || || | ||| | |
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| T |
9603677 |
acatgtggtggtggaaacttgaggacttgttcaccatcagtgcggaaaatttccttgagtactggtaagggactgattttgctcaatatatgtgtaggaa |
9603578 |
T |
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| Q |
126 |
gcttaattccaccttcaaagaggtcacgcacatcttggaaactatcaaactcgcgtggtgtaaaattcaaatcaaa---tgcagattcgaatgcgggtaa |
222 |
Q |
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| | ||||||||||||||| | ||||||||| || | ||| ||||||||||| ||| || |||||||||||||| | |||||| || ||||| |
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| T |
9603577 |
gttcaattccaccttcaaataagtcacgcacttcatcgaagctatcaaactcatttggagtgaaattcaaatcaaagattacagatttaaacaaaggtaa |
9603478 |
T |
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| Q |
223 |
tacgttttgagatacagattttattccatatgtgagaaagtctgaggacttcaagtgaccaaaattttcatctcttggaacata |
306 |
Q |
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|| | |||||| | ||||||||||||||||| || ||||| || ||||||||||| |||||||||||||||||||||||||| |
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| T |
9603477 |
cacatcttgagacaatgattttattccatatgtaaggaagtcagatgacttcaagtgtccaaaattttcatctcttggaacata |
9603394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 239 - 298
Target Start/End: Complemental strand, 9589162 - 9589103
Alignment:
| Q |
239 |
gattttattccatatgtgagaaagtctgaggacttcaagtgaccaaaattttcatctctt |
298 |
Q |
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| T |
9589162 |
gattttaatccgtatgtaaggaagtctgatgactttaagtgaccaaaattttcatctctt |
9589103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 671 - 722
Target Start/End: Complemental strand, 9603247 - 9603196
Alignment:
| Q |
671 |
ccctgcgagggtaaggatgtgtgctagaccctccaagaacagggcgagcaag |
722 |
Q |
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| T |
9603247 |
cccttcgagggtaaggatgagtgctagaccctccaaggaccggacgagcaag |
9603196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 6451878 - 6451942
Alignment:
| Q |
242 |
tttattccatatgtgagaaagtctgaggacttcaagtgaccaaaattttcatctcttggaacata |
306 |
Q |
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| T |
6451878 |
tttattccatacataagaaagtctgatgacttcaagtgaccaaaattttcatctcttggaacata |
6451942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 6457965 - 6458032
Alignment:
| Q |
239 |
gattttattccatatgtgagaaagtctgaggacttcaagtgaccaaaattttcatctcttggaacata |
306 |
Q |
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| T |
6457965 |
gattttattccatacataaggaagtctgatgacttcaagtgaccaaaattttcatctcttggaacata |
6458032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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