View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4893-Insertion-4 (Length: 794)
Name: NF4893-Insertion-4
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4893-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 8 - 570
Target Start/End: Complemental strand, 45763454 - 45762892
Alignment:
| Q |
8 |
aatttgacattaaaatgttaggccatggccatttactagaacaactaaatcaagttctctagaaggtatcattagataaggactacaattattggaatta |
107 |
Q |
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| T |
45763454 |
aatttgacattaaaatgttaggccatggccatttactagaacaactaaatcaagttctctagaaggtatcattagataaggactacaattattggaatta |
45763355 |
T |
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| Q |
108 |
actaaatcaaaagtttattgtttttccttattgtgtgtgacatttactaaatgttaatgaatggagatatcaattgcagcagagggaaacagcttaccaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45763354 |
actaaatcaaaagtttattgtttttccttattgtgtgtgacatttactaaatgttaatgaatggagatatca-ttgcagcagagggaaacagcttaccaa |
45763256 |
T |
|
| Q |
208 |
acccgaattgttgctcgaggcgaatgccgatcaagaccaggcataacatgtttgatagcaagtgaataattccagcatgtaaccaaatgcaagtgaaaag |
307 |
Q |
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| T |
45763255 |
acccgaattgttgctcgaggcgaatgccgatcaagaccaggcataacatgtttgatagcaagtgaataattccagcatgtaaccaaatgcaagtgaaaag |
45763156 |
T |
|
| Q |
308 |
tctccattcctgatgctggtgcacaacattaacccatctaagagctcccatcttgattaatcttaaaaatccaccaaacatttcaaatcaagatattttc |
407 |
Q |
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| T |
45763155 |
tctccattcctgatgctggtgcacaacattaacccatctaagagctcccatcttgattaatcttaaaaatccaccaaacatttcaaatcaatatattttc |
45763056 |
T |
|
| Q |
408 |
ttcaaaaacataataggctattagttaattaaacggttacatgcaaagaaatgaaagtttcccc-tcacacaaattcaataactaacacaaattgcaata |
506 |
Q |
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| T |
45763055 |
ttcaaaaacataataggctattagttaattaaacggttacatgcaaagaaatgaaagtttccccttcacacaaattcaataaataacacaaattgcaata |
45762956 |
T |
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| Q |
507 |
gaaatgctgaaatcaaaccatgtcattcaattcaatctaaaataaactcagaccaacaaatcaa |
570 |
Q |
| |
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| T |
45762955 |
gaaatgctgaaatcaaagcatgtcattcaattcaatctaaaataaactcagaccaacaaatcaa |
45762892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-108
Query Start/End: Original strand, 583 - 794
Target Start/End: Complemental strand, 45762850 - 45762639
Alignment:
| Q |
583 |
aagcgcataaaccctaaatcttgggaggtctcaataaactatgagatgattttagatttatgtaaaaatttatatcgatgatatatacttatagtacaag |
682 |
Q |
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| T |
45762850 |
aagcgcataaaccctaaatcttgggaggtctcaataaactatgagatgattttagatttatgtaaaaatttatatcgatgatatatacttatagtccaag |
45762751 |
T |
|
| Q |
683 |
gacaaatttggaaaatatgaattggctaaaacaatattgaacaatgtaacatttgtgtaatattgcatcagtgtagtttgattactcctcataacacaat |
782 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45762750 |
gacaaatttggaaaatatgaattggctaaaacaatattgaacgatgtaacatttgtgtaatattgcatcagtgtagtttgattactcctcataacacaat |
45762651 |
T |
|
| Q |
783 |
tataagggttca |
794 |
Q |
| |
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||||| |||||| |
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| T |
45762650 |
tataaaggttca |
45762639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 202 - 314
Target Start/End: Complemental strand, 39281350 - 39281238
Alignment:
| Q |
202 |
taccaaacccgaattgttgctcgaggcgaatgccgatcaagaccaggcataacatgtttgatagcaagtgaataattccagcatgtaaccaaatgcaagt |
301 |
Q |
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|||| ||||| |||||||| ||||||||||| || || |||||||| | | |||||||| | ||| ||||| ||||||||||||||||||||||| | |
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| T |
39281350 |
taccgaacccaaattgttgttcgaggcgaattccaatgaagaccagactgatcatgtttgctgccaaatgaatgattccagcatgtaaccaaatgcatga |
39281251 |
T |
|
| Q |
302 |
gaaaagtctccat |
314 |
Q |
| |
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|| |||||||||| |
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| T |
39281250 |
gacaagtctccat |
39281238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 581 - 657
Target Start/End: Original strand, 29889984 - 29890059
Alignment:
| Q |
581 |
aaaagcgcataaaccctaaatcttgggaggtctcaataaactatgagatgattttagatttatgtaaaaatttatat |
657 |
Q |
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||||| ||||||||| | |||||||| |||||||||||| ||| | ||| ||||||||||| |||||||||||||| |
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| T |
29889984 |
aaaagtgcataaacctttaatcttggtaggtctcaataacatat-aaatggttttagatttacgtaaaaatttatat |
29890059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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