View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4893-Insertion-5 (Length: 780)

Name: NF4893-Insertion-5
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4893-Insertion-5
NF4893-Insertion-5
[»] chr7 (25 HSPs)
chr7 (471-780)||(7097409-7097716)
chr7 (15-208)||(7096282-7096476)
chr7 (471-757)||(29526621-29526905)
chr7 (227-469)||(7096471-7096704)
chr7 (508-780)||(15455575-15455845)
chr7 (471-702)||(13783718-13783948)
chr7 (471-702)||(664979-665209)
chr7 (471-702)||(21588140-21588370)
chr7 (480-663)||(47280319-47280504)
chr7 (471-545)||(21824380-21824454)
chr7 (471-701)||(27244041-27244270)
chr7 (250-396)||(40800207-40800353)
chr7 (496-701)||(5609524-5609728)
chr7 (471-701)||(33972932-33973162)
chr7 (477-699)||(19017023-19017244)
chr7 (285-418)||(24171906-24172040)
chr7 (491-527)||(6621367-6621403)
chr7 (491-527)||(15846921-15846957)
chr7 (491-527)||(15856131-15856167)
chr7 (504-701)||(32535005-32535203)
chr7 (491-527)||(36308020-36308056)
chr7 (471-546)||(5086597-5086672)
chr7 (491-524)||(21103609-21103642)
chr7 (474-515)||(28544201-28544242)
chr7 (609-702)||(21824224-21824316)
[»] chr6 (13 HSPs)
chr6 (470-780)||(23631356-23631664)
chr6 (471-780)||(15950570-15950877)
chr6 (471-767)||(13434136-13434430)
chr6 (471-546)||(21698712-21698787)
chr6 (502-732)||(7090441-7090669)
chr6 (471-546)||(1638258-1638333)
chr6 (471-546)||(30063655-30063730)
chr6 (471-535)||(1641286-1641350)
chr6 (491-527)||(17812263-17812299)
chr6 (491-527)||(33132288-33132324)
chr6 (317-419)||(26405203-26405305)
chr6 (472-701)||(11986063-11986291)
chr6 (478-527)||(32097146-32097195)
[»] scaffold0071 (1 HSPs)
scaffold0071 (471-780)||(52446-52753)
[»] chr1 (22 HSPs)
chr1 (471-780)||(26418777-26419084)
chr1 (471-757)||(32108219-32108503)
chr1 (474-663)||(22161636-22161825)
chr1 (471-567)||(11420350-11420446)
chr1 (249-419)||(28410744-28410914)
chr1 (287-396)||(13579462-13579571)
chr1 (471-546)||(4179973-4180048)
chr1 (250-389)||(7375357-7375496)
chr1 (471-546)||(11644751-11644826)
chr1 (477-702)||(29600855-29601079)
chr1 (491-527)||(17431184-17431220)
chr1 (491-527)||(44002267-44002303)
chr1 (478-517)||(20491531-20491570)
chr1 (209-348)||(29523258-29523397)
chr1 (474-536)||(5811389-5811451)
chr1 (249-319)||(6949273-6949342)
chr1 (293-422)||(11066122-11066251)
chr1 (286-374)||(42724736-42724824)
chr1 (217-349)||(30686663-30686790)
chr1 (496-546)||(21182640-21182690)
chr1 (286-324)||(25009709-25009747)
chr1 (586-699)||(27527140-27527252)
[»] chr4 (20 HSPs)
chr4 (477-779)||(13200619-13200911)
chr4 (471-757)||(47782784-47783068)
chr4 (471-549)||(4946682-4946760)
chr4 (471-704)||(20089047-20089279)
chr4 (471-663)||(17459285-17459477)
chr4 (471-621)||(13905858-13906008)
chr4 (327-418)||(30106369-30106460)
chr4 (471-693)||(25553105-25553326)
chr4 (471-696)||(15065758-15065982)
chr4 (290-358)||(54710849-54710917)
chr4 (269-396)||(35675404-35675530)
chr4 (250-392)||(32979839-32979980)
chr4 (471-644)||(40686865-40687038)
chr4 (491-527)||(12601877-12601913)
chr4 (339-422)||(11528339-11528422)
chr4 (379-422)||(24157307-24157350)
chr4 (327-396)||(12241365-12241434)
chr4 (250-315)||(12241584-12241649)
chr4 (275-344)||(25310832-25310901)
chr4 (480-517)||(32663721-32663758)
[»] chr2 (16 HSPs)
chr2 (477-766)||(7861387-7861670)
chr2 (275-378)||(21424768-21424871)
chr2 (471-702)||(21084987-21085217)
chr2 (510-603)||(34819523-34819616)
chr2 (471-701)||(34071354-34071582)
chr2 (619-738)||(18777088-18777205)
chr2 (474-662)||(20471062-20471250)
chr2 (493-663)||(27072247-27072417)
chr2 (491-527)||(17102781-17102817)
chr2 (471-663)||(31426334-31426526)
chr2 (491-527)||(32019515-32019551)
chr2 (474-517)||(26370489-26370532)
chr2 (479-517)||(29992110-29992148)
chr2 (376-422)||(45423790-45423836)
chr2 (478-527)||(3981784-3981833)
chr2 (374-419)||(4658160-4658204)
[»] chr3 (22 HSPs)
chr3 (471-597)||(32073596-32073722)
chr3 (471-701)||(2439338-2439567)
chr3 (471-699)||(9734440-9734667)
chr3 (471-546)||(34935091-34935166)
chr3 (471-699)||(8968376-8968603)
chr3 (471-702)||(15789890-15790120)
chr3 (286-387)||(54677514-54677615)
chr3 (287-409)||(2985377-2985499)
chr3 (290-348)||(51057755-51057813)
chr3 (269-422)||(19897363-19897516)
chr3 (476-615)||(13434458-13434597)
chr3 (290-349)||(49877265-49877324)
chr3 (376-435)||(48901889-48901949)
chr3 (374-422)||(50646063-50646111)
chr3 (471-546)||(26307377-26307452)
chr3 (496-702)||(14504134-14504339)
chr3 (376-435)||(48903468-48903528)
chr3 (471-546)||(2651797-2651872)
chr3 (478-517)||(5561699-5561738)
chr3 (653-772)||(13434623-13434740)
chr3 (478-517)||(17058814-17058853)
chr3 (618-663)||(21793939-21793984)
[»] chr8 (15 HSPs)
chr8 (250-419)||(9420001-9420170)
chr8 (471-699)||(3989372-3989599)
chr8 (471-702)||(7995032-7995262)
chr8 (622-779)||(12246858-12247013)
chr8 (499-722)||(25133001-25133221)
chr8 (471-701)||(28161946-28162175)
chr8 (167-348)||(4529840-4530021)
chr8 (471-701)||(25732329-25732558)
chr8 (293-426)||(32414837-32414970)
chr8 (491-527)||(14848426-14848462)
chr8 (290-348)||(22699490-22699548)
chr8 (376-428)||(6115922-6115975)
chr8 (478-517)||(10543992-10544031)
chr8 (479-517)||(4424661-4424699)
chr8 (478-515)||(96157-96194)
[»] chr5 (20 HSPs)
chr5 (471-702)||(13065460-13065690)
chr5 (562-699)||(31291564-31291700)
chr5 (471-656)||(38640083-38640266)
chr5 (471-702)||(8724557-8724787)
chr5 (209-348)||(1969364-1969503)
chr5 (480-695)||(18521640-18521853)
chr5 (294-405)||(39803629-39803740)
chr5 (471-546)||(19609145-19609220)
chr5 (471-686)||(20587500-20587714)
chr5 (471-702)||(20705963-20706193)
chr5 (493-663)||(36961986-36962156)
chr5 (241-346)||(7144896-7145001)
chr5 (471-663)||(42765164-42765356)
chr5 (491-527)||(11123618-11123654)
chr5 (471-546)||(11619161-11619236)
chr5 (492-527)||(19237678-19237713)
chr5 (376-422)||(21634293-21634339)
chr5 (376-422)||(21642540-21642586)
chr5 (290-348)||(28798140-28798198)
chr5 (377-422)||(27797959-27798004)
[»] scaffold1689 (1 HSPs)
scaffold1689 (471-701)||(761-990)
[»] scaffold0114 (1 HSPs)
scaffold0114 (471-701)||(11522-11751)
[»] scaffold0251 (1 HSPs)
scaffold0251 (471-702)||(2226-2456)
[»] scaffold0445 (1 HSPs)
scaffold0445 (471-701)||(14011-14242)
[»] scaffold0388 (1 HSPs)
scaffold0388 (480-546)||(14453-14519)


Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 471 - 780
Target Start/End: Original strand, 7097409 - 7097716
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| || ||| ||||||||||||||||||||| ||| |||| ||    
T  7097409 tgtggctgccttagctaactcatgagcaacctcatttgcttgcctcttaataaactcgacataagagtttattaaaaaggtattacaaaacttgatattt 7097508  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    | |||||| ||||||||||||||||||||||||| ||| ||||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||||    
T  7097509 ttatccataatggatccaaattcggtgctatctcctctgcctttgttaaaataaccagctactgttttcgaatctacctcaaaatcaaca-tttgtgagc 7097607  T
Q  671 tgaagttcattgatccaccgaattgcatgataaaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggtcttggaacgaaca 770  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7097608 tgaagttcattgatccaccgaattgcatgat-aaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggtcttggaacgaacg 7097706  T
Q  771 tggtttcctt 780  Q
    ||||||||||    
T  7097707 tggtttcctt 7097716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 7096282 - 7096476
Alignment:
Q  15 tatagtaacttctaaacatgtactatttagaagcaaaagaaaaggtaagaaatcttgaaggagtacgaccgtaacgtcatggactcagcacgaaaggctg 114  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  7096282 tatagtaacttctaaacatgtactatttagaagcaaaagaaaaagtaagaaatcttgaaggagtacgaccgtaacgtcatcgacccagcacgaaaggctg 7096381  T
Q  115 aagaagcttctttatgtgtttgttgtctctcacaataattataaaaactcgttttagcaaaaataaattgtttt-aaataaatgtcgttttaact 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||    
T  7096382 aagaagcttctttatgtgtttgttgtctctcacaataattataaaaactcattttagtaaaaataaattgttttaaaataaatgtcgttttaact 7096476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 471 - 757
Target Start/End: Complemental strand, 29526905 - 29526621
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||| |||||| ||| |||||||| |||||||| |||||||| |     
T  29526905 tgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagta 29526806  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    |  ||||| ||||| |||||||||||| |||||| |||  ||||||  ||||||||| ||| |||||||||||||||||||||||||||| |||||||||    
T  29526805 ttctccataatggacccaaattcggtgttatctcctcttgctttgttgaaataatcagctattgttttcgaatctacctcaaaatcaaca-tttgtgagc 29526707  T
Q  671 tgaagttcattgatccaccgaattgcatgataaaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggt 757  Q
    ||||||||||||||||||||| ||||||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||    
T  29526706 tgaagttcattgatccaccgagttgcatgat-aaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacatggt 29526621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 227 - 469
Target Start/End: Original strand, 7096471 - 7096704
Alignment:
Q  227 ttaactattttcattagtatctctaattattattatgtatattactttcaaagcatcgtattctactttaatttataatgatgggaaatacaccaataaa 326  Q
    |||||||||||||||||| ||| ||||||||| |||||||        |||||||| ||||||||||||||||||||||||||| |||| ||||||||||    
T  7096471 ttaactattttcattagtgtctttaattattactatgtat--------caaagcat-gtattctactttaatttataatgatggaaaatgcaccaataaa 7096561  T
Q  327 taacaagactattttagtaaaaaggtaatgttcttagacaacataattacattttttaatatgtgtgtaaaaaatttaagcgacactcattttaaacgga 426  Q
    ||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||| |||||| ||||||||||||| ||||||||||||    
T  7096562 taataagactattttagtaaaaaggtaatgttcttagacagtataattacattttttaatatatgtataaaaagtttaagcgacacttattttaaacgga 7096661  T
Q  427 agaaatatataaaaacatgcaagtgcacataacatgaatccat 469  Q
    |||||||||||||||||||| ||| ||||||||||||||||||    
T  7096662 agaaatatataaaaacatgctagtacacataacatgaatccat 7096704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 508 - 780
Target Start/End: Complemental strand, 15455845 - 15455575
Alignment:
Q  508 gcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatccattatggatccaaattcggtgctatctcatc 607  Q
    ||||| |||||| ||||||||| |||||| ||| |||||||| |||||||| |||||||| | |  ||||| ||||| |||||||||||| |||||| ||    
T  15455845 gcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagtattctccataatggacccaaattcggtgttatctcctc 15455746  T
Q  608 tacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagttcattgatccaccgaattgcatgataaaagt 707  Q
    |  | ||||  ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||    
T  15455745 ttgccttgttgaaataatcagctactgttttcgaatctacctcaaaatcaaca-tttgtgagctgaagttcattgatccaccgagttgcatgat-aaagt 15455648  T
Q  708 ctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggtcttggaacgaacatggtttcctt 780  Q
    |  |||||||||||||||| |||||||||||||||||||||||||||||| || || || |||||||||||||    
T  15455647 cctaaagcttctccaatgttaactggacacagtggtgaaaaccacatggtttttgaccggacatggtttcctt 15455575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 471 - 702
Target Start/End: Complemental strand, 13783948 - 13783718
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||   |||| ||||||||||| ||||| |||||| ||||||||| |||||||||| ||||||| |    |||| | ||||| ||     
T  13783948 tgtggctgccttagctagagtatgtgcaacctcattcgcttgcctcctagtaaactcgacatgagattttgttaaaaatgaccgacaaaaatggatgcta 13783849  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
       ||||||||||| ||||||||||||  |||||  |  |||||||  ||||||||  |||||  |||||| || || |||||||||||||||| ||||     
T  13783848 ctgtccattatggaaccaaattcggtgacatctccacggcctttgttgaaataatccgctactcgtttcgagtcaacttcaaaatcaacatttt-tgagt 13783750  T
Q  671 tgaagttcattgatccaccgaattgcatgata 702  Q
    |||||||||| |||||||||||||||||||||    
T  13783749 tgaagttcatggatccaccgaattgcatgata 13783718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 471 - 702
Target Start/End: Original strand, 664979 - 665209
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||| || ||||||||| | ||| |||||||||||||||||||||||||||||||||| |||||| ||| ||||| ||||| | ||| | |||||||      
T  664979 tgtggttgtcttagctaattcatgtgcaacctcatttgcttgtctcctaataaactcgacatgagagtttgttaaataggtactgcaaaattggatacaa 665078  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
      |||||| ||  | ||||||| ||||  || || || ||||||||  ||||||||| ||||| |||| ||||| ||||||||||||||  ||||  ||     
T  665079 ctatccataatataaccaaatttggtgacatgtcctcgacctttgttgaaataatcagctactctttttgaatcaacctcaaaatcaac-gtttgcaagt 665177  T
Q  671 tgaagttcattgatccaccgaattgcatgata 702  Q
    ||||||||||  || |||||||||||||||||    
T  665178 tgaagttcatgtattcaccgaattgcatgata 665209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 471 - 702
Target Start/End: Original strand, 21588140 - 21588370
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||| |||||||| | ||| ||||||||||||| ||| |||||||||||||||| |||||| ||| ||||| ||| | || |  | ||||||||     
T  21588140 tgtggctgcgttagctaattcatgtgcaacctcatttgattgcctcctaataaactcgacatgagagtttgttaaataggaactatagaattggatacta 21588239  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
       ||||| ||||| |||||||||||   ||||| || ||||||||  ||||||||| ||| | |||||||||| ||||||||||||||   |||  ||     
T  21588240 ctgtccataatggaaccaaattcggtaacatctcctcaacctttgttgaaataatcagctattattttcgaatcaacctcaaaatcaac-gattgcaagt 21588338  T
Q  671 tgaagttcattgatccaccgaattgcatgata 702  Q
    ||||||||||  ||||||||||||||||||||    
T  21588339 tgaagttcatgaatccaccgaattgcatgata 21588370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 480 - 663
Target Start/End: Original strand, 47280319 - 47280504
Alignment:
Q  480 cttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatccatt 579  Q
    ||||||||||| ||||||||||||||||| ||| || | |||||    || |||||| ||| ||||||| ||||||||| |||| ||| | | ||| ||     
T  47280319 cttagctaactcatgagcaacctcatttgattgccttccaataa----gacatgagagtttgttaaaaaagtattacaaaactgaatattattatctata 47280414  T
Q  580 atggatccaaattcggtg------ctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattt 663  Q
    ||||||||||||||||||      ||||||| | | ||||||| |||||||||| |||||||||| |||| |||||||||||||||||||    
T  47280415 atggatccaaattcggtgttggtgctatctcttttgcctttgttaaaataatcagctactgtttttgaatttacctcaaaatcaacattt 47280504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 471 - 545
Target Start/End: Complemental strand, 21824454 - 21824380
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaa 545  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||    
T  21824454 tgtggctgccttagctaacgtatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaa 21824380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 471 - 701
Target Start/End: Original strand, 27244041 - 27244270
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||||||||||||| |||| ||||||||||||| |||  ||||||||||||||| |||||| ||| ||||| | ||||||||| | || | |||     
T  27244041 tgtggctgccttagctaacatatgtgcaacctcatttgtttggttcctaataaactcgacatgagagtttgttaaataagtattacaaaattgtaaacta 27244140  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
      |||||| ||||| ||||| ||||||  || ||  | ||| ||||  ||||||||||||||| |||| || || ||||| ||||||| | |||| |||     
T  27244141 ctatccataatggaaccaaactcggtgacatttccacgaccattgttgaaataatcaactactctttttgagtcaacctcgaaatcaata-tttgagagt 27244239  T
Q  671 tgaagttcattgatccaccgaattgcatgat 701  Q
    ||||||| ||  ||||| ||||| |||||||    
T  27244240 tgaagtttatgtatccatcgaatcgcatgat 27244270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 250 - 396
Target Start/End: Original strand, 40800207 - 40800353
Alignment:
Q  250 taattattattatgtatattactttcaaagcatcgtattctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaa 349  Q
    |||||||||||||| |||  ||||||||||  || | ||||||||||||||||||||||| ||||| ||||||||  |||||||  | |||||||||||     
T  40800207 taattattattatgcatacaactttcaaagtgtcattttctactttaatttataatgatgagaaatgcaccaatagttaacaaggttgttttagtaaaag 40800306  T
Q  350 ggtaatgttcttagacaacataattacattttttaatatgtgtgtaa 396  Q
     || || |  ||||||||||| |||  |||| |||||||||||||||    
T  40800307 tgtcatatctttagacaacattattgtatttcttaatatgtgtgtaa 40800353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 496 - 701
Target Start/End: Original strand, 5609524 - 5609728
Alignment:
Q  496 gcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatccattatggatccaaattcgg 595  Q
    ||||||||||| ||||| |||||||||||||||| |||||| ||| ||||  |||| |||||  | ||||||||   |||||| ||  | ||||||||||    
T  5609524 gcaacctcattcgcttgcctcctaataaactcgacatgagagtttgttaagtaggtgttacagaagtggatactgctatccataataaaaccaaattcgg 5609623  T
Q  596 tgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagttcattgatccaccgaattg 695  Q
    ||  |||||  | ||||||||  ||||||||| ||||| |||| ||  | ||||| ||||||||| |||||||| |||||||| |  ||||||||| |||    
T  5609624 tgacatctccacgacctttgttgaaataatcagctactcttttagagccaacctcgaaatcaaca-tttgtgagttgaagttcttgtatccaccgagttg 5609722  T
Q  696 catgat 701  Q
    | ||||    
T  5609723 cgtgat 5609728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 471 - 701
Target Start/End: Complemental strand, 33973162 - 33972932
Alignment:
Q  471 tgtggctgccttagctaa-cttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatact 569  Q
    ||||||| |||||||||| | |||| ||||||||||||| ||||||| ||||||||| || |||||| ||| ||||| | || |||||| | || | |||    
T  33973162 tgtggctaccttagctaaacgtatgtgcaacctcatttgtttgtctcttaataaacttgacatgagagtttgttaaataagtgttacaaaattgtaaact 33973063  T
Q  570 ttcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgag 669  Q
     | ||| || ||||| ||||| ||||||  |||||  | ||| ||||  ||||||||| |||||  ||| || || ||||| ||||||||| |||| |||    
T  33973062 attatctataatggaaccaaactcggtgacatctccacgaccattgttgaaataatcagctactcgttttgagtcaacctcgaaatcaaca-tttgagag 33972964  T
Q  670 ctgaagttcattgatccaccgaattgcatgat 701  Q
     ||||||||||  |||||| |||| |||||||    
T  33972963 ttgaagttcatgtatccactgaatcgcatgat 33972932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 477 - 699
Target Start/End: Original strand, 19017023 - 19017244
Alignment:
Q  477 tgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatcc 576  Q
    |||||||| ||| | ||| |||||| |||||||||| |||||||||||||| | | |||| ||| ||||| | | ||||||  | || ||||| | ||||    
T  19017023 tgccttagttaattcatgggcaaccacatttgcttgcctcctaataaactcaacacgagagtttgttaaatatgaattacagaaatgtatactattatcc 19017122  T
Q  577 attatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagt 676  Q
    || ||||| ||||| |||||| ||||||   |  || | | |||||||||| ||||| ||||||| || ||||||||||||||| | |||| | ||||||    
T  19017123 atgatggaaccaaactcggtgatatctcccttctctctattaaaataatcagctacttttttcgagtcaacctcaaaatcaaca-tctgtgggttgaagt 19017221  T
Q  677 tcattgatccaccgaattgcatg 699  Q
    ||||  ||||||  |||||||||    
T  19017222 tcatgtatccactaaattgcatg 19017244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 285 - 418
Target Start/End: Complemental strand, 24172040 - 24171906
Alignment:
Q  285 tattctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaaggtaatgttcttagac-aacataattacatttttt 383  Q
    |||| ||||||||||||||||||| |||||| ||| | ||  |||||| |||||||||||||||  || ||||   ||||| || || ||| ||||| ||    
T  24172040 tattttactttaatttataatgatcggaaatgcactactagttaacaatactattttagtaaaagtgtcatgtctatagacaaatattattgcatttctt 24171941  T
Q  384 aatatgtgtgtaaaaaatttaagcgacactcattt 418  Q
    |||||||||| || || ||||| ||||||||||||    
T  24171940 aatatgtgtgaaacaactttaaacgacactcattt 24171906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 527
Target Start/End: Original strand, 6621367 - 6621403
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    |||||||||||||||||||||||||||||||||||||    
T  6621367 tatgagcaacctcatttgcttgtctcctaataaactc 6621403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 527
Target Start/End: Original strand, 15846921 - 15846957
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    |||||||||||||||||||||||||||||||||||||    
T  15846921 tatgagcaacctcatttgcttgtctcctaataaactc 15846957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 527
Target Start/End: Original strand, 15856131 - 15856167
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    |||||||||||||||||||||||||||||||||||||    
T  15856131 tatgagcaacctcatttgcttgtctcctaataaactc 15856167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 504 - 701
Target Start/End: Original strand, 32535005 - 32535203
Alignment:
Q  504 atttgcttgtctcctaataaactcgatatgagat--tttattaaaaaggtattacaatactggatactttcatccattatggatccaaattcggtgctat 601  Q
    ||||||||||||| |||||||||||| ||||||   ||| ||||| | ||  ||||| | ||||| || | |||||| || || ||||||||||||  ||    
T  32535005 atttgcttgtctcttaataaactcgacatgagagagtttgttaaataagtgctacaaaagtggatgctattatccatgatagaaccaaattcggtgacat 32535104  T
Q  602 ctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagttcattgatccaccgaattgcatgat 701  Q
    |||  | ||||||||  ||||||||| ||||| |||  || |  ||||| || ||||||||| || || ||||||||||  |||||||||||||||||||    
T  32535105 ctccacgacctttgttgaaataatcagctactctttatgagttaacctcgaagtcaacattt-gtaagttgaagttcatgtatccaccgaattgcatgat 32535203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 527
Target Start/End: Complemental strand, 36308056 - 36308020
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    |||||||||||||||||||||||||||||||||||||    
T  36308056 tatgagcaacctcatttgcttgtctcctaataaactc 36308020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 5086672 - 5086597
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    |||||||||| ||||||   |||| ||||||||||| ||||| |||||||||||||||| |||||| ||| |||||    
T  5086672 tgtggctgccctagctagagtatgtgcaacctcattcgcttgcctcctaataaactcgacatgagagtttgttaaa 5086597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 524
Target Start/End: Original strand, 21103609 - 21103642
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaa 524  Q
    ||||||||||||||||||||||||||||||||||    
T  21103609 tatgagcaacctcatttgcttgtctcctaataaa 21103642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 515
Target Start/End: Complemental strand, 28544242 - 28544201
Alignment:
Q  474 ggctgccttagctaacttatgagcaacctcatttgcttgtct 515  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  28544242 ggctacctttgctaacttatgagcaacctcatttgcttgtct 28544201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 702
Target Start/End: Complemental strand, 21824316 - 21824224
Alignment:
Q  609 acctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagttcattgatccaccgaattgcatgata 702  Q
    ||||||||  ||||||||| ||||| |||| || || ||||| ||||||||| |||| ||| ||||||||||  |||||||| || ||||||||    
T  21824316 acctttgttgaaataatcagctactcttttagagtcaacctcgaaatcaaca-tttgagagttgaagttcatgtatccaccggatcgcatgata 21824224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 179; Significance: 3e-96; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 470 - 780
Target Start/End: Complemental strand, 23631664 - 23631356
Alignment:
Q  470 gtgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatact 569  Q
    ||||||||||||||||||||| ||||||||| || | ||||| |||  ||||||||||||||||||| ||| |||||||  |||||||| | |||||| |    
T  23631664 gtgtggctgccttagctaactcatgagcaacatcgtctgcttatcttttaataaactcgatatgagagtttgttaaaaatatattacaaaaatggatatt 23631565  T
Q  570 ttcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgag 669  Q
     | |||||| ||||||||||||||||||||||||   || ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  23631564 attatccataatggatccaaattcggtgctatcttcgctgcctttgttaaaataatcaactactgttttcgaatctacctcaaaatcgaca-tttgtgag 23631466  T
Q  670 ctgaagttcattgatccaccgaattgcatgataaaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggtcttggaacgaac 769  Q
     ||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  23631465 ttgaagttcattgatccaccaaattgcacgat-aaagtctaaaagcttctccaatgtcaactggacatagtggtgaaaaccacatggtctttgaacgaac 23631367  T
Q  770 atggtttcctt 780  Q
    |||||||||||    
T  23631366 atggtttcctt 23631356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 471 - 780
Target Start/End: Complemental strand, 15950877 - 15950570
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||| |||||| ||| |||||||| |||||||| |||||||| |     
T  15950877 tgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagta 15950778  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    |  ||||| ||||| |||||||||||| |||||| |||  | ||||  ||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  15950777 ttctccataatggacccaaattcggtgttatctcctcttgccttgttgaaataatcagctactgttttcgaatctacctcaaaatcaaca-tttgtgagc 15950679  T
Q  671 tgaagttcattgatccaccgaattgcatgataaaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggtcttggaacgaaca 770  Q
    ||||||||||||||||||||| ||||||||| ||||||  |||||||||||||||| |||||||||||||||||||||||||||||| || || || ||     
T  15950678 tgaagttcattgatccaccgagttgcatgat-aaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacatggtttttgaccggacg 15950580  T
Q  771 tggtttcctt 780  Q
    ||||||||||    
T  15950579 tggtttcctt 15950570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 471 - 767
Target Start/End: Complemental strand, 13434430 - 13434136
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||| ||||||||||||||| |||||||| ||| |||| |||||||||||||||||| | |||||| ||| ||||||||  |||| || ||||||||||     
T  13434430 tgtgtctgccttagctaactcatgagcaatctcttttgattgtctcctaataaactcaacatgagagtttgttaaaaagaaattagaaaactggatacta 13434331  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    | |||||| || ||| |||||| | ||||||||| ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  13434330 ttatccataattgattcaaatttgatgctatctcctctgcctttgttaaaataatcaactactgttttcgaatctatctcaaaatcaaca-tttgtgagc 13434232  T
Q  671 tgaagttcattgatccaccgaattgcatgataaaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggtcttggaacga 767  Q
    ||||||||||||| |||||||||| |||||| |||||| ||||||||||||||||| |||| |||||||| |||||||| ||||||| || ||||||    
T  13434231 tgaagttcattgaaccaccgaattacatgat-aaagtcgcaaagcttctccaatgttaactagacacagttgtgaaaacaacatggtgtttgaacga 13434136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 21698787 - 21698712
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    ||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||    
T  21698787 tgtggctgccttagctaaaacatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaa 21698712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 502 - 732
Target Start/End: Original strand, 7090441 - 7090669
Alignment:
Q  502 tcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatccattatggatccaaattcggtgctat 601  Q
    ||||||||||| |||||||||||||| | |||||| ||| ||||| | |  ||||   | ||||||||   |||||| ||||| ||||| |||||| |||    
T  7090441 tcatttgcttgcctcctaataaactcaacatgagagtttgttaaatatgatttactgaattggatactagtatccataatggaaccaaactcggtgatat 7090540  T
Q  602 ctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagttcattgatccaccgaattgcatgat 701  Q
    |||     ||||||| |||| ||||| ||||| ||||  |||| ||||||||||||||| ||||||||| |||||||||  ||||||| ||||| ||| |    
T  7090541 ctcccaggcctttgttaaaagaatcagctactattttttaatcaacctcaaaatcaaca-tttgtgagccgaagttcatgaatccaccaaattgtatggt 7090639  T
Q  702 aaaagtctcaaagcttctccaatgtcaactg 732  Q
     ||| || ||||||||||| || ||||||||    
T  7090640 -aaattcccaaagcttctctaacgtcaactg 7090669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 546
Target Start/End: Original strand, 1638258 - 1638333
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    |||||||| |||||||||  |||| ||||||||||||||||| ||||||||||| |||| |||||| ||| |||||    
T  1638258 tgtggctgtcttagctaaagtatgtgcaacctcatttgcttgcctcctaataaattcgacatgagagtttgttaaa 1638333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 546
Target Start/End: Original strand, 30063655 - 30063730
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    ||||||||  ||||||||   ||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||    
T  30063655 tgtggctgttttagctaaaacatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaa 30063730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 535
Target Start/End: Original strand, 1641286 - 1641350
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgag 535  Q
    |||||||| |||||||||  |||| ||||||||||||||||| ||||||||||| |||| |||||    
T  1641286 tgtggctgtcttagctaaagtatgtgcaacctcatttgcttgcctcctaataaattcgacatgag 1641350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 527
Target Start/End: Complemental strand, 17812299 - 17812263
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    |||||||||||||||||||||||||||||||||||||    
T  17812299 tatgagcaacctcatttgcttgtctcctaataaactc 17812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 527
Target Start/End: Original strand, 33132288 - 33132324
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    |||||||||||||||||||||||||||||||||||||    
T  33132288 tatgagcaacctcatttgcttgtctcctaataaactc 33132324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 317 - 419
Target Start/End: Complemental strand, 26405305 - 26405203
Alignment:
Q  317 caccaataaataacaagactattttagtaaaaaggtaatgttcttagacaacataattacattttttaatatgtgtgtaaaaaatttaagcgacactcat 416  Q
    ||||||||  ||||||| ||||||||||||||  || ||||   |||||||||| ||| ||||| ||||||||||||||| ||  |||| | ||||||||    
T  26405305 caccaatagttaacaaggctattttagtaaaagtgtcatgtctatagacaacattattgcatttattaatatgtgtgtaacaaccttaaaccacactcat 26405206  T
Q  417 ttt 419  Q
    |||    
T  26405205 ttt 26405203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 472 - 701
Target Start/End: Complemental strand, 11986291 - 11986063
Alignment:
Q  472 gtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatacttt 571  Q
    ||||||||||||||||    ||| |||||||| ||| |||| |||||||||||||||| |||||| ||| ||||| | || ||||||   |||| |||      
T  11986291 gtggctgccttagctagagcatgtgcaacctcgtttacttgcctcctaataaactcgacatgagagtttgttaaataagtgttacaaagttggacactac 11986192  T
Q  572 catccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagct 671  Q
     |||||| ||||| ||||| ||||||  || ||  | ||| ||||  ||||||| | ||||| |||| || || | ||| ||||||||| |||  ||| |    
T  11986191 tatccataatggaaccaaactcggtgacatttccacgaccattgttgaaataattagctactctttttgagtcaatctcgaaatcaaca-tttaagagtt 11986093  T
Q  672 gaagttcattgatccaccgaattgcatgat 701  Q
    |||||||||  ||||||||||| |||||||    
T  11986092 gaagttcatgaatccaccgaatcgcatgat 11986063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 527
Target Start/End: Complemental strand, 32097195 - 32097146
Alignment:
Q  478 gccttagctaacttatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    ||||||||||| |||||||| ||||| |||||||||||||  ||||||||    
T  32097195 gccttagctaaattatgagcgacctcgtttgcttgtctccgcataaactc 32097146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 174; Significance: 3e-93; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 471 - 780
Target Start/End: Complemental strand, 52753 - 52446
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||||| |||| |||| ||||||||||| |||||||||||||||| |||||| ||| |||||||  |||| ||| |||||||| |     
T  52753 tgtggctgccttagctaactcatgaacaacgtcatttgcttgcctcctaataaactcgacatgagagtttgttaaaaatatattgcaaaactggatagta 52654  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    |  ||||| |||||||||||||||||| |||||| |||  |||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  52653 ttctccataatggatccaaattcggtgttatctcctctggctttgtgaaaataatcagctactgttttcgaatctacctcaaaatcaaca-tttgtgagc 52555  T
Q  671 tgaagttcattgatccaccgaattgcatgataaaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggtcttggaacgaaca 770  Q
    ||||||||||||||||||| | ||||||||| ||||||  |||||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||    
T  52554 tgaagttcattgatccaccaagttgcatgat-aaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacatggtttttgaacggaca 52456  T
Q  771 tggtttcctt 780  Q
    ||||||||||    
T  52455 tggtttcctt 52446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 2e-88; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 471 - 780
Target Start/End: Original strand, 26418777 - 26419084
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||| |||||| ||| |||||||| |||||||| |||||||| |     
T  26418777 tgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagta 26418876  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    |  ||||| ||||| |||||||||||| |||||| |||  | ||||  ||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  26418877 ttctccataatggacccaaattcggtgttatctcctcttgccttgttgaaataatcagctactgttttcgaatctacctcaaaatcaaca-tttgtgagc 26418975  T
Q  671 tgaagttcattgatccaccgaattgcatgataaaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggtcttggaacgaaca 770  Q
    ||||||||||||||||||||| ||||||||| ||||||  |||||||||||||||| |||||||||||||||||||||||||||||| || || || ||     
T  26418976 tgaagttcattgatccaccgagttgcatgat-aaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacatggtttttgaccggacg 26419074  T
Q  771 tggtttcctt 780  Q
    ||||||||||    
T  26419075 tggtttcctt 26419084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 471 - 757
Target Start/End: Complemental strand, 32108503 - 32108219
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||| |||||| ||| |||||||| |||||||| |||||||| |     
T  32108503 tgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagta 32108404  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    |  ||||| ||||| |||||||||||| |||||| |||  | ||||  ||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  32108403 ttctccataatggacccaaattcggtgttatctcctcttgccttgttgaaataatcagctactgttttcgaatctacctcaaaatcaaca-tttgtgagc 32108305  T
Q  671 tgaagttcattgatccaccgaattgcatgataaaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggt 757  Q
    ||||||||||||||||||||| ||||||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||    
T  32108304 tgaagttcattgatccaccgagttgcatgat-aaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacatggt 32108219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 474 - 663
Target Start/End: Complemental strand, 22161825 - 22161636
Alignment:
Q  474 ggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttca 573  Q
    ||||||||||||||  ||||||||||||||||| ||||| |||||||||||||||| |||||| ||| ||||  | ||||||||| | ||||||||   |    
T  22161825 ggctgccttagctagattatgagcaacctcattcgcttgcctcctaataaactcgacatgagagtttgttaagtaagtattacaaaattggatactacta 22161726  T
Q  574 tccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattt 663  Q
    ||||| || || ||||||| |||| ||||||    ||||||||  ||||||||| ||||| |||| || || | ||| ||||||||||||    
T  22161725 tccataatagaaccaaatttggtgatatctccatgacctttgttgaaataatcagctactcttttagagtcaatctcgaaatcaacattt 22161636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 471 - 567
Target Start/End: Original strand, 11420350 - 11420446
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggata 567  Q
    ||||||||||||| |||| | |||| ||||||||||| |||| |||||||||||||||| |||||| ||| |||||||| |||||||| | ||||||    
T  11420350 tgtggctgccttaactaattcatgaacaacctcatttacttgcctcctaataaactcgacatgagagtttgttaaaaagatattacaaaattggata 11420446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 249 - 419
Target Start/End: Complemental strand, 28410914 - 28410744
Alignment:
Q  249 ctaattattattatgtatattactttcaaagcatcgtattctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaa 348  Q
    ||||||||||||||||| |  |||| |||||  || |  |||||||||||||||||||||||||||| ||||||||  ||||||   |||||||||||||    
T  28410914 ctaattattattatgtacacaacttccaaagtttcattctctactttaatttataatgatgggaaatgcaccaatagttaacaatgttattttagtaaaa 28410815  T
Q  349 aggtaatgttcttagacaacataattacattttttaatatgtgtgtaaaaaatttaagcgacactcatttt 419  Q
      |  || |  || || ||||| ||| ||||| ||||||||||||||| || ||||| ||||| |||||||    
T  28410814 gtgacatatctttggataacattattgcatttcttaatatgtgtgtaacaactttaaacgacattcatttt 28410744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 287 - 396
Target Start/End: Complemental strand, 13579571 - 13579462
Alignment:
Q  287 ttctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaaggtaatgttcttagacaacataattacattttttaat 386  Q
    |||||||||||| |||||||||||||  | ||||| ||  ||||||||||||||||||||||  ||  |||  || |||||||| ||||||||| |||||    
T  13579571 ttctactttaatatataatgatgggatgtgcaccattagttaacaagactattttagtaaaagtgtcctgtctttggacaacattattacatttcttaat 13579472  T
Q  387 atgtgtgtaa 396  Q
    ||||||||||    
T  13579471 atgtgtgtaa 13579462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 4180048 - 4179973
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    ||||||||| |||| |||   ||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||    
T  4180048 tgtggctgctttagttaaaacatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaa 4179973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 250 - 389
Target Start/End: Original strand, 7375357 - 7375496
Alignment:
Q  250 taattattattatgtatattactttcaaagcatcgtattctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaa 349  Q
    |||||||||||||| | | ||||| ||||| | |  ||| ||||||||||||||||||| |||||| ||| ||||  ||||||| ||||||||||||||     
T  7375357 taattattattatgcacactacttccaaagtaccacattttactttaatttataatgatcggaaatgcacaaatagttaacaaggctattttagtaaaag 7375456  T
Q  350 ggtaatgttcttagacaacataattacattttttaatatg 389  Q
        ||||   |||||||||| ||||||||| ||||||||    
T  7375457 tagcatgtctatagacaacattattacatttcttaatatg 7375496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 11644826 - 11644751
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    |||| |||||||||||||  |||| ||||||||||||| ||| |||||||||||||||| |||||| ||| |||||    
T  11644826 tgtgactgccttagctaaagtatgcgcaacctcatttgtttgcctcctaataaactcgacatgagagtttgttaaa 11644751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 477 - 702
Target Start/End: Complemental strand, 29601079 - 29600855
Alignment:
Q  477 tgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatcc 576  Q
    ||||||||||||   ||| ||||||||||||||||| |||||||||||||||| |||||| |||  ||||  ||| |||||  | |||| |||    |||    
T  29601079 tgccttagctaaagcatgtgcaacctcatttgcttgcctcctaataaactcgacatgagagtttgataaattggtgttacagaattggacactgctgtcc 29600980  T
Q  577 attatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagt 676  Q
    || || || || || ||||||  |||||  | ||| ||||  ||||||||| ||| | |||| || |||||||| ||||||||| |||| ||| ||||||    
T  29600979 atgatagagccgaactcggtgacatctccacgaccattgttgaaataatcagctattcttttagagtctacctcgaaatcaaca-tttgagagttgaagt 29600881  T
Q  677 tcattgatccaccgaattgcatgata 702  Q
    ||||  ||||||||||| || |||||    
T  29600880 tcatgtatccaccgaatcgcgtgata 29600855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 527
Target Start/End: Complemental strand, 17431220 - 17431184
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    |||||||||||||||||||||||||||||||||||||    
T  17431220 tatgagcaacctcatttgcttgtctcctaataaactc 17431184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 527
Target Start/End: Complemental strand, 44002303 - 44002267
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    |||||||||||||||||||||||||||||||||||||    
T  44002303 tatgagcaacctcatttgcttgtctcctaataaactc 44002267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 478 - 517
Target Start/End: Complemental strand, 20491570 - 20491531
Alignment:
Q  478 gccttagctaacttatgagcaacctcatttgcttgtctcc 517  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  20491570 gccttagctaatttatgagcaacctcatttgcttgtctcc 20491531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 209 - 348
Target Start/End: Complemental strand, 29523397 - 29523258
Alignment:
Q  209 ttttcaatgtagtattaattaactattttcattagtatctctaattattattatgtatattactttcaaagcatcgtattctactttaatttataatgat 308  Q
    ||||||||||| |||||||||  | |||||| ||||| |  |||||||||||||  | |  ||||  |||| ||| | || | |||||||||||||||||    
T  29523397 ttttcaatgtactattaattactttttttcaatagtacccttaattattattatccacacaacttctaaagtatcattttgtgctttaatttataatgat 29523298  T
Q  309 gggaaatacaccaataaataacaagactattttagtaaaa 348  Q
    |  |||| ||||||||| || | |||||||||||||||||    
T  29523297 gacaaatgcaccaataactagcgagactattttagtaaaa 29523258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 536
Target Start/End: Complemental strand, 5811451 - 5811389
Alignment:
Q  474 ggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgaga 536  Q
    ||||||||||||||| | |||||| ||| |||||| |||||||||| ||||||||| ||||||    
T  5811451 ggctgccttagctaattaatgagctaccccatttgtttgtctcctattaaactcgacatgaga 5811389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 6949342 - 6949273
Alignment:
Q  249 ctaattattattatgtatattactttcaaagcatcgtattctactttaatttataatgatgggaaatacac 319  Q
    |||||||||| |||||| | ||| ||| ||||| | ||||||||||||||||||||||||| |||||||||    
T  6949342 ctaattattactatgtacactacattcgaagca-catattctactttaatttataatgatgagaaatacac 6949273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 293 - 422
Target Start/End: Original strand, 11066122 - 11066251
Alignment:
Q  293 tttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaaggtaatgttcttagacaacataattacattttttaatatgtgt 392  Q
    |||||||||||||||||  |||| ||||||||  |||| ||||||||||||||||||  | || |  || |||||||| ||| ||||  |||||||| ||    
T  11066122 tttaatttataatgatgacaaatgcaccaatagctaacgagactattttagtaaaaatatcatatatttggacaacattatttcattccttaatatgcgt 11066221  T
Q  393 gtaaaaaatttaagcgacactcattttaaa 422  Q
    | ||   ||| ||| |||||||||||||||    
T  11066222 gcaattgattaaagtgacactcattttaaa 11066251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 286 - 374
Target Start/End: Original strand, 42724736 - 42724824
Alignment:
Q  286 attctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaaggtaatgttcttagacaacataatt 374  Q
    |||||| |||||||||||||||||  |||| ||  ||||  ||||||||||||||||||||||  || ||||   ||||||||||||||    
T  42724736 attctaatttaatttataatgatgaaaaatgcattaatagttaacaagactattttagtaaaagtgtcatgtatatagacaacataatt 42724824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 349
Target Start/End: Original strand, 30686663 - 30686790
Alignment:
Q  217 gtagtattaattaactattttcattagtatctctaattattattatgtatattactttcaaagcatcgtattctactttaatttataatgatgggaaata 316  Q
    ||||||||| ||| || |||||| ||||| |  |||||||||||||  | |  |||||||||| ||| | || || |||||||||||||||||| ||||     
T  30686663 gtagtattagtta-cttttttcaatagtacccttaattattattatccacacaactttcaaagtatcattttgtaatttaatttataatgatggcaaatg 30686761  T
Q  317 caccaataaataacaagactattttagtaaaaa 349  Q
    ||||    |||||| ||||||||||||||||||    
T  30686762 cacc----aataacgagactattttagtaaaaa 30686790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 21182690 - 21182640
Alignment:
Q  496 gcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    ||||||||||||| ||| |||||||||||||||| |||||| ||| |||||    
T  21182690 gcaacctcatttgtttgcctcctaataaactcgacatgagagtttgttaaa 21182640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 286 - 324
Target Start/End: Original strand, 25009709 - 25009747
Alignment:
Q  286 attctactttaatttataatgatgggaaatacaccaata 324  Q
    ||||||||||||||||||||||||||| || ||||||||    
T  25009709 attctactttaatttataatgatgggagatgcaccaata 25009747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 699
Target Start/End: Complemental strand, 27527252 - 27527140
Alignment:
Q  586 ccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagttcattgatc 685  Q
    |||||||||||  ||||||  |  |||||||  ||||||||| ||||| |||| || || || |||||||||||| ||||| || |||||||| |  |||    
T  27527252 ccaaattcggtagtatctccacggcctttgtagaaataatcagctactcttttagagtcaacttcaaaatcaaca-tttgtaagttgaagttcttgtatc 27527154  T
Q  686 caccgaattgcatg 699  Q
    ||||||||||||||    
T  27527153 caccgaattgcatg 27527140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 1e-86; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 477 - 779
Target Start/End: Complemental strand, 13200911 - 13200619
Alignment:
Q  477 tgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatcc 576  Q
    |||||||||||||| ||||||||||||||||||||| |||||||| ||||||| |||||| ||| |||||||| |||||||| |||| ||  | | ||||    
T  13200911 tgccttagctaactcatgagcaacctcatttgcttgcctcctaatgaactcgacatgagagtttgttaaaaagatattacaaaactgaatgttattatcc 13200812  T
Q  577 attatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagt 676  Q
    || ||| ||| |||||||||| | |||| ||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||         ||||||||    
T  13200811 ataatgcatctaaattcggtgatgtctcctctgcttttgttaaaataatcaactactgttttcgaatctatctcaaaatcaac---------gctgaagt 13200721  T
Q  677 tcattgatccaccgaattgcatgataaaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggtcttggaacgaacatggttt 776  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13200720 tcattgatccaccgaattgcatgataaa-gtcccaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggtctttgaacgaacatggttt 13200622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 471 - 757
Target Start/End: Complemental strand, 47783068 - 47782784
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||| |||||| ||| |||||||| |||||||| |||||||  |     
T  47783068 tgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggattgta 47782969  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    |  ||||| |||||||||||||||||| |||||| |||  ||||||  ||||||||| |||||||||||||||||||||||||||||||| ||||||||     
T  47782968 ttctccataatggatccaaattcggtgttatctcctcttgctttgttgaaataatcagctactgttttcgaatctacctcaaaatcaaca-tttgtgagt 47782870  T
Q  671 tgaagttcattgatccaccgaattgcatgataaaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggt 757  Q
    | ||||||||||||||||||||||||||||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||    
T  47782869 taaagttcattgatccaccgaattgcatgat-aaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacatggt 47782784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 549
Target Start/End: Original strand, 4946682 - 4946760
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaag 549  Q
    |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  4946682 tgtggctgtcttagctaactcatgagcaacctcatttgcttgcctcctaataaactcgatatgagaatttgttaaaaag 4946760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 471 - 704
Target Start/End: Original strand, 20089047 - 20089279
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||| |||||||| ||| | ||| | |||||||||| |||||||| ||||||||| || |||||| ||||||||| | | | | ||  | ||||||||     
T  20089047 tgtggttgccttagataattcatgtgtaacctcatttacttgtctcgtaataaacttgacatgagagtttattaaatatgaactgcataattggatacta 20089146  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    | |||||| ||||| ||||||||||||  ||||| || | ||||||  ||||| |||  |||| |||| || || ||||||||||||||| ||||  ||     
T  20089147 ttatccataatggacccaaattcggtgacatctcctcgatctttgttgaaatagtcagttactctttttgagtcaacctcaaaatcaaca-tttgcaagt 20089245  T
Q  671 tgaagttcattgatccaccgaattgcatgataaa 704  Q
    ||||||||||  ||||||||||||||||||||||    
T  20089246 tgaagttcatgaatccaccgaattgcatgataaa 20089279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 471 - 663
Target Start/End: Complemental strand, 17459477 - 17459285
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||| ||||    ||| ||||||||||| ||||| |||||||||||||||| |||||| ||| ||||  | || |||||| | |||||| |     
T  17459477 tgtggctgcctttgctagaacatgtgcaacctcattcgcttgcctcctaataaactcgacatgagagtttgttaagtaagtgttacaaaagtggatatta 17459378  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattt 663  Q
      |||||| || || |||||||||||| ||||||    ||||||||  ||||||||||||||| |||| || || ||||| ||||||||||||    
T  17459377 ctatccataatagaaccaaattcggtgatatctccatgacctttgttgaaataatcaactactcttttagagtcaacctcgaaatcaacattt 17459285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 471 - 621
Target Start/End: Original strand, 13905858 - 13906008
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||| ||||||||||||||| |||  ||| |||||||| ||| || ||||||||||  | |||||| | | ||||||| | ||||||| |||||||||||    
T  13905858 tgtgactgccttagctaactcatggacaatctcatttgtttgccttctaataaacttaacatgagagtatgttaaaaatgaattacaaaactggatactt 13905957  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaa 621  Q
    | |||||| ||||| ||||| |||||| |||||| | | ||||||| ||||    
T  13905958 ttatccataatggagccaaactcggtgatatctcttttgcctttgttaaaa 13906008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 327 - 418
Target Start/End: Original strand, 30106369 - 30106460
Alignment:
Q  327 taacaagactattttagtaaaaaggtaatgttcttagacaacataattacattttttaatatgtgtgtaaaaaatttaagcgacactcattt 418  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||| ||| ||||| ||||||||||| || |||  ||||  |||||||||||    
T  30106369 taacaaggctattttagtaaaaatgtaatgtccttagacaacatcattgcatttcttaatatgtgtctagaaaccttaaaggacactcattt 30106460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 471 - 693
Target Start/End: Complemental strand, 25553326 - 25553105
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||||||||||||   ||| ||||||||||||||||| |||||||||||||| | |||||| ||| |||||  ||| |||||  | |||| |||     
T  25553326 tgtggctgccttagctaaagcatgtgcaacctcatttgcttgcctcctaataaactcaacatgagagtttgttaaattggttttacagaattggacacta 25553227  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    | |||||| || || || || |||||   |||||  |  || ||||  ||||| ||| ||||| |||| || || ||||| ||||||||| |||| |||     
T  25553226 ttatccatgatagagccgaactcggtaacatctccacggccattgttgaaatagtcagctactcttttagagtcaacctcgaaatcaaca-tttgagagt 25553128  T
Q  671 tgaagttcattgatccaccgaat 693  Q
    |||||||||| ||||||||||||    
T  25553127 tgaagttcatggatccaccgaat 25553105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 696
Target Start/End: Complemental strand, 15065982 - 15065758
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||| ||||||   |||| ||||||||||| ||||| |||||||||||||||| |||||| ||| ||||  | |||||| || | |  |||||     
T  15065982 tgtggctgccctagctagtgtatgtgcaacctcattcgcttgcctcctaataaactcgacatgagagtttgttaagtaagtattagaaaagtaaatactg 15065883  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    |  ||||| || || |||||||||||   |||||  |  |||||||  ||||||||||||||| |||| || || || |||||||||||| ||||| ||     
T  15065882 ttgtccataatagaaccaaattcggtagcatctccacggcctttgttgaaataatcaactactcttttagagtcaacttcaaaatcaaca-tttgtaagt 15065784  T
Q  671 tgaagttcattgatccaccgaattgc 696  Q
    ||||||||    ||||||||||||||    
T  15065783 tgaagttctcgtatccaccgaattgc 15065758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 54710917 - 54710849
Alignment:
Q  290 tactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaaggtaatgtt 358  Q
    |||||||||||||||||||||||||| || |||||  ||||||| ||||||||||||||| || |||||    
T  54710917 tactttaatttataatgatgggaaatgcatcaatagttaacaaggctattttagtaaaaatgtcatgtt 54710849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 269 - 396
Target Start/End: Original strand, 35675404 - 35675530
Alignment:
Q  269 tactttcaaagcatcgtattctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaaggtaatgttcttagacaac 368  Q
    ||||||||||| ||| | ||||||||||||| |||||||||| |||| ||||||||  ||||||   |||||||||| ||  |||||||  ||||| |||    
T  35675404 tactttcaaagtatcattttctactttaatt-ataatgatggaaaatgcaccaatagttaacaatgttattttagtagaagtgtaatgtctttagataac 35675502  T
Q  369 ataattacattttttaatatgtgtgtaa 396  Q
    || ||| ||||| ||||||| |||||||    
T  35675503 atcattgcatttcttaatatatgtgtaa 35675530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 250 - 392
Target Start/End: Complemental strand, 32979980 - 32979839
Alignment:
Q  250 taattattattatgtatattactttcaaagcatcgtattctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaa 349  Q
    |||||||||||||| | |  |||| ||||| ||| | |||||||||||||||||||||||||||||  | |||||  ||| ||| ||||||||||||||     
T  32979980 taattattattatgcacacaacttccaaagtatcattttctactttaatttataatgatgggaaat-gatcaatagttaataaggctattttagtaaaag 32979882  T
Q  350 ggtaatgttcttagacaacataattacattttttaatatgtgt 392  Q
     || || || || ||||| || ||| ||||||||||| |||||    
T  32979881 tgtcatatttttggacaatattattgcattttttaatgtgtgt 32979839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 644
Target Start/End: Complemental strand, 40687038 - 40686865
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||| |||||| ||||| | ||| ||||||||||||| |||||||| ||||||||| | |||||| ||| ||||| ||  ||||||  | |||| |||     
T  40687038 tgtggttgccttggctaattcatgggcaacctcatttgtttgtctcccaataaactccacatgagagtttgttaaatagaaattacataattggacacta 40686939  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatc 644  Q
      |||| | |||||  |||||| |||  |||||| || |||||| | |||||||| | ||||| ||||||||||    
T  40686938 ctatccttaatggaagcaaatttggttatatctcctcgacctttcttaaaataattagctactattttcgaatc 40686865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 527
Target Start/End: Original strand, 12601877 - 12601913
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    |||||||||||| ||||||||||||||||||||||||    
T  12601877 tatgagcaaccttatttgcttgtctcctaataaactc 12601913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 11528422 - 11528339
Alignment:
Q  339 tttagtaaaaaggtaatgttcttagacaacataattacattttttaatatgtgtgtaaaaaatttaagcgacactcattttaaa 422  Q
    ||||||||||  || ||||| || || | ||| |||| |||||||||  |||| ||||||||||||| ||||||||||||||||    
T  11528422 tttagtaaaattgttatgttttttgatatcattattatattttttaacttgtgcgtaaaaaatttaaacgacactcattttaaa 11528339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 422
Target Start/End: Original strand, 24157307 - 24157350
Alignment:
Q  379 tttttaatatgtgtgtaaaaaatttaagcgacactcattttaaa 422  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||    
T  24157307 tttttaatatgtgtgtaaaaactttaaacgacattcattttaaa 24157350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 327 - 396
Target Start/End: Complemental strand, 12241434 - 12241365
Alignment:
Q  327 taacaagactattttagtaaaaaggtaatgttcttagacaacataattacattttttaatatgtgtgtaa 396  Q
    ||||||| |||||||| |||||  || ||||   |||||||||| ||||||||| |||||||||||||||    
T  12241434 taacaaggctattttaataaaagtgtcatgtctatagacaacattattacatttcttaatatgtgtgtaa 12241365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 12241649 - 12241584
Alignment:
Q  250 taattattattatgtatattactttcaaagcatcgtattctactttaatttataatgatgggaaat 315  Q
    |||||||||||||| | | ||||| ||||| | |  ||| ||||||||||||||||||||||||||    
T  12241649 taattattattatgcacactacttccaaagtaccacattttactttaatttataatgatgggaaat 12241584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 25310901 - 25310832
Alignment:
Q  275 caaagcatcgtattctactttaatttataatgatgggaaatacaccaataaataacaagactattttagt 344  Q
    |||| |||| ||||||||||||||| |||||||| || |||||| |||||  ||||||  ||||||||||    
T  25310901 caaaacatcatattctactttaattaataatgataggtaatacaacaatagttaacaatgctattttagt 25310832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 480 - 517
Target Start/End: Complemental strand, 32663758 - 32663721
Alignment:
Q  480 cttagctaacttatgagcaacctcatttgcttgtctcc 517  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  32663758 cttagctaatttatgagcaatctcatttgcttgtctcc 32663721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 4e-71; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 477 - 766
Target Start/End: Complemental strand, 7861670 - 7861387
Alignment:
Q  477 tgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatcc 576  Q
    |||||||||||||| |||||||| |||||||||||| |||||||||||    | |||||| ||| |||||||| |||| ||| |||||||| | |  |||    
T  7861670 tgccttagctaactcatgagcaatctcatttgcttgcctcctaataaa----acatgagagtttgttaaaaagatattgcaaaactggatagtattctcc 7861575  T
Q  577 attatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagt 676  Q
    || ||||||||||||| |||  |||||| |||  |||||| |||||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||    
T  7861574 ataatggatccaaatttggtattatctcctctggctttgttaaaataatcagctattgttttcaaatctacctcaaaatcaaca-tttgtgagctgaagt 7861476  T
Q  677 tcattgatccaccgaattgcatgataaaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccacatggtcttggaacg 766  Q
    ||||||||||||||| ||||||||| ||||||  |||||||||||||||| |||||||||||||||||||||||||||||| || |||||    
T  7861475 tcattgatccaccgagttgcatgat-aaagtcctaaagcttctccaatgttaactggacacagtggtgaaaaccacatggtttttgaacg 7861387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 275 - 378
Target Start/End: Original strand, 21424768 - 21424871
Alignment:
Q  275 caaagcatcgtattctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaaggtaatgttcttagacaacataatt 374  Q
    ||||||||| ||||| ||||||||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||| ||||||| |||||||||||| |||    
T  21424768 caaagcatcatattcaactttaatttataatgacgggaaatgcactaataaataataagactattttagtaaaaatgtaatgtccttagacaacattatt 21424867  T
Q  375 acat 378  Q
    ||||    
T  21424868 acat 21424871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 471 - 702
Target Start/End: Original strand, 21084987 - 21085217
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||||||||||||   ||| ||||||||||||||||| |||||||||||||||| |||||| |||  ||||   || |||||| | |||| |||     
T  21084987 tgtggctgccttagctaaagcatgtgcaacctcatttgcttgcctcctaataaactcgacatgagagtttgataaatttgtgttacaaaattggacacta 21085086  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
      |||||| || || || || ||||||  |||||  | ||| ||||  ||||||||| ||||| |||| || || ||||| ||||||||| |||| |||     
T  21085087 ctatccataatagaaccgaactcggtgacatctccacgaccattgttgaaataatcagctactcttttagagtcaacctcgaaatcaaca-tttgagagt 21085185  T
Q  671 tgaagttcattgatccaccgaattgcatgata 702  Q
    |||||||||| |||||||||||| || |||||    
T  21085186 tgaagttcatggatccaccgaatcgcgtgata 21085217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 510 - 603
Target Start/End: Complemental strand, 34819616 - 34819523
Alignment:
Q  510 ttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatccattatggatccaaattcggtgctatct 603  Q
    |||||| ||||||||||||| |||| | ||| |||||| | |||||||| |||||||| | |||||||| ||||||||||||||||||||||||    
T  34819616 ttgtcttctaataaactcgacatgaaagtttgttaaaaggatattacaaaactggatattatcatccataatggatccaaattcggtgctatct 34819523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 471 - 701
Target Start/End: Original strand, 34071354 - 34071582
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||||||||||||  | || ||||||||||| | |||  |||||||||| |||| |||||| ||| ||||| |||| |||||| | |||||||      
T  34071354 tgtggctgccttagctaaagtgtgtgcaacctcattcgtttgcttcctaataaattcgacatgagagtttgttaaataggtgttacaaaagtggatacca 34071453  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
      ||| || || || ||||||||||||  |||||  | ||| ||||  || |||||| ||||| |||| || || ||||| ||||||||| || |||||     
T  34071454 ctatctataattgaaccaaattcggtgacatctc-ccaaccattgttgaagtaatcagctactcttttagagtcaacctcgaaatcaaca-ttagtgagt 34071551  T
Q  671 tgaagttcattgatccaccgaattgcatgat 701  Q
    ||||||||||  |||||||||||||||||||    
T  34071552 tgaagttcatgaatccaccgaattgcatgat 34071582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 619 - 738
Target Start/End: Complemental strand, 18777205 - 18777088
Alignment:
Q  619 aaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagttcattgatccaccgaattgcatgataaaagtctcaaagcttc 718  Q
    ||||||||| ||||| |||||||||| ||||| ||||||||| ||||||| || ||| |||| |||||||||||||||||| |  ||||| |||||||||    
T  18777205 aaataatcagctacttttttcgaatcaacctcgaaatcaaca-tttgtgaacttaaggtcatggatccaccgaattgcatggt-caagtcacaaagcttc 18777108  T
Q  719 tccaatgtcaactggacaca 738  Q
    | |||  ||||||| |||||    
T  18777107 ttcaacatcaactgaacaca 18777088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 474 - 662
Target Start/End: Complemental strand, 20471250 - 20471062
Alignment:
Q  474 ggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttca 573  Q
    ||||||||||||||   |||||||||||||||||||||| |||||||||||||| | |||||| ||| ||||  |  | | |||  | |||||||| | |    
T  20471250 ggctgccttagctagagtatgagcaacctcatttgcttgcctcctaataaactctacatgagagtttgttaagtaaatgtgacacaattggatactatta 20471151  T
Q  574 tccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacatt 662  Q
    ||||| ||||| || ||||||||| ||||||     |||||||  ||||| ||| ||||| |||| || || ||||| |||||||||||    
T  20471150 tccataatggaaccgaattcggtgatatctccatggcctttgttgaaatagtcagctactcttttagagtcaacctcgaaatcaacatt 20471062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 493 - 663
Target Start/End: Complemental strand, 27072417 - 27072247
Alignment:
Q  493 tgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatccattatggatccaaatt 592  Q
    |||||||||||||||||||| |||||||||||||| | |||||| ||| ||||  |  | | |||  | |||||||| | |||||| ||||| || ||||    
T  27072417 tgagcaacctcatttgcttgcctcctaataaactcaacatgagagtttgttaagtaactgtgacaccattggatactcttatccataatggagccgaatt 27072318  T
Q  593 cggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattt 663  Q
    ||||| ||||||     |||||||  ||||||||| ||||| |||| || || ||||| ||||||||||||    
T  27072317 cggtgatatctccatggcctttgttgaaataatcagctactcttttagagtcaacctcgaaatcaacattt 27072247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 527
Target Start/End: Original strand, 17102781 - 17102817
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    |||||||||||||||||||||||||||||||||||||    
T  17102781 tatgagcaacctcatttgcttgtctcctaataaactc 17102817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 663
Target Start/End: Complemental strand, 31426526 - 31426334
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||| |||| |||   ||||||||||||||||||||| ||| |||||||||||| |||||| ||| ||||| |  |||| ||  | |||| |||     
T  31426526 tgtggctgctttagttaaaacatgagcaacctcatttgcttgcctcttaataaactcgacatgagagtttgttaaataattattgcagaattggacacta 31426427  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattt 663  Q
       ||||| || || ||||||||||||  |||||  | ||| ||||  ||||||||| ||||| |||| || || || |||||||||||||||    
T  31426426 ctgtccataatagagccaaattcggtgacatctccacgaccattgttgaaataatcagctactctttttgagtccacttcaaaatcaacattt 31426334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 527
Target Start/End: Original strand, 32019515 - 32019551
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    |||||||||||||||||||||||||||||||||||||    
T  32019515 tatgagcaacctcatttgcttgtctcctaataaactc 32019551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 474 - 517
Target Start/End: Complemental strand, 26370532 - 26370489
Alignment:
Q  474 ggctgccttagctaacttatgagcaacctcatttgcttgtctcc 517  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||    
T  26370532 ggctgccttagctaatttatgagcaacctcatttgcttgcctcc 26370489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 479 - 517
Target Start/End: Complemental strand, 29992148 - 29992110
Alignment:
Q  479 ccttagctaacttatgagcaacctcatttgcttgtctcc 517  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  29992148 cctttgctaacttatgggcaacctcatttgcttgtctcc 29992110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 45423790 - 45423836
Alignment:
Q  376 cattttttaatatgtgtgtaaaaaatttaagcgacactcattttaaa 422  Q
    ||||| |||||||||||||||||| ||||| ||||| ||||||||||    
T  45423790 catttcttaatatgtgtgtaaaaattttaaacgacattcattttaaa 45423836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 527
Target Start/End: Original strand, 3981784 - 3981833
Alignment:
Q  478 gccttagctaacttatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    ||||||||||| | ||| ||||||||||| |||||||||| |||||||||    
T  3981784 gccttagctaattcatgggcaacctcattcgcttgtctccgaataaactc 3981833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 374 - 419
Target Start/End: Complemental strand, 4658204 - 4658160
Alignment:
Q  374 tacattttttaatatgtgtgtaaaaaatttaagcgacactcatttt 419  Q
    |||||||||||||||||||||| |||| |||| |||||||||||||    
T  4658204 tacattttttaatatgtgtgta-aaaacttaaacgacactcatttt 4658160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 471 - 597
Target Start/End: Original strand, 32073596 - 32073722
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||| |||||| ||| |||||||| |||||||| |||||||| |     
T  32073596 tgtggctgccttagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtttgttaaaaagatattacaaaactggatagta 32073695  T
Q  571 tcatccattatggatccaaattcggtg 597  Q
    |  ||||| ||||| ||||||||||||    
T  32073696 ttctccataatggacccaaattcggtg 32073722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 471 - 701
Target Start/End: Complemental strand, 2439567 - 2439338
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattaca-atactggatact 569  Q
    ||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||| |   |||||| |  || || |||    
T  2439567 tgtggctgccttagctaaagtatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataaccattacagaagcttga-act 2439469  T
Q  570 ttcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgag 669  Q
       |||||| ||||| ||||| ||||||  |||||  | ||||||||  ||||||||| ||||| |||| || || ||||| ||||||||| |||| |||    
T  2439468 actatccataatggagccaaactcggtgacatctccacgacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaaca-tttgagag 2439370  T
Q  670 ctgaagttcattgatccaccgaattgcatgat 701  Q
     ||||||||||  ||||||||||| |||||||    
T  2439369 ttgaagttcatgtatccaccgaatcgcatgat 2439338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 471 - 699
Target Start/End: Original strand, 9734440 - 9734667
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||||||||||||   ||| ||||||||||||||||| |||||||||||||||| |||||| ||| |||||  |||||||||  | |||| |||     
T  9734440 tgtggctgccttagctaaagcatgtgcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaattggtattacagaattggacacta 9734539  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    | |||||| || || ||||| ||||||  |||||    ||| ||||  ||||| ||| ||||| |||| || || ||||| ||||||||| |||| |||     
T  9734540 ttatccatgatagagccaaactcggtgacatctccatgaccattgttgaaatagtcagctactcttttagagtcaacctcgaaatcaaca-tttgagagt 9734638  T
Q  671 tgaagttcattgatccaccgaattgcatg 699  Q
    |||||||||| |||||||| ||| |||||    
T  9734639 tgaagttcatggatccacctaatcgcatg 9734667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 34935166 - 34935091
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||| ||| |||||    
T  34935166 tgtggctgccttagctaacttatgtgcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaa 34935091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 471 - 699
Target Start/End: Original strand, 8968376 - 8968603
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||||||||||||   ||| ||||||||||||||||| |||||||||||||||| |||||| ||| |||||  ||| |||||  | |||| |||     
T  8968376 tgtggctgccttagctaaagcatgtgcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaattggttttacagaattggacacta 8968475  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    | |||||| || || || || ||||| | |||||  |  || ||||  ||||| ||| ||||| |||| || || ||||| ||||||||| |||| |||     
T  8968476 ttatccatgatagaaccgaactcggtaccatctccacggccgttgttgaaatagtcagctactcttttagagtcaacctcgaaatcaaca-tttgagagt 8968574  T
Q  671 tgaagttcattgatccaccgaattgcatg 699  Q
    |||||||||| |||||||||||| |||||    
T  8968575 tgaagttcatggatccaccgaatcgcatg 8968603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 471 - 702
Target Start/End: Complemental strand, 15790120 - 15789890
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||  ||||| ||||||||||| ||||| |||||| ||||||||| |||||| ||| ||||||  |    |||  | || || ||     
T  15790120 tgtggctgccttagctagattatgtgcaacctcattcgcttgcctcctagtaaactcgacatgagagtttgttaaaagtgatcgacagaaatgaatgcta 15790021  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
       |||||||| || ||||||||||||  |||||  | ||||||||  ||||||||  |||||  |||||| || || ||||||||||||||||  |||     
T  15790020 ctgtccattatagaaccaaattcggtgacatctccacgacctttgttgaaataatctgctactcgtttcgagtcaacttcaaaatcaacattttc-gagt 15789922  T
Q  671 tgaagttcattgatccaccgaattgcatgata 702  Q
    |||||||||| |||||||||||||||||||||    
T  15789921 tgaagttcatggatccaccgaattgcatgata 15789890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 286 - 387
Target Start/End: Original strand, 54677514 - 54677615
Alignment:
Q  286 attctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaaggtaatgttcttagacaacataattacattttttaa 385  Q
    ||||| ||||||| ||| |||||||||||| ||||||||| ||||||||||||||||||||||  || ||||   |||| ||||| ||| ||||||||||    
T  54677514 attctcctttaatctatgatgatgggaaatgcaccaataattaacaagactattttagtaaaagtgtcatgtatatagataacattattgcattttttaa 54677613  T
Q  386 ta 387  Q
    ||    
T  54677614 ta 54677615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 287 - 409
Target Start/End: Original strand, 2985377 - 2985499
Alignment:
Q  287 ttctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaaggtaatgttcttagacaacataattacattttttaat 386  Q
    ||||| |||||||||||||||||| |||| ||||||||  ||| |||| | |||||||||||| || || |  || ||||| || ||||||||| |||||    
T  2985377 ttctattttaatttataatgatggaaaatgcaccaatagttaataagagtgttttagtaaaaatgtcatatatttggacaatattattacatttcttaat 2985476  T
Q  387 atgtgtgtaaaaaatttaagcga 409  Q
    |||||||||| ||  ||||||||    
T  2985477 atgtgtgtaacaaccttaagcga 2985499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 51057813 - 51057755
Alignment:
Q  290 tactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaa 348  Q
    |||||||||||||||||||||||||| ||||||||  |||||||| |||||||||||||    
T  51057813 tactttaatttataatgatgggaaatgcaccaatagttaacaagattattttagtaaaa 51057755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 269 - 422
Target Start/End: Original strand, 19897363 - 19897516
Alignment:
Q  269 tactttcaaagcatcgtattctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaaggtaatgttcttagacaac 368  Q
    ||||||||||| | | |||| || ||||||||||||||||| ||||| ||||||||  |||  || ||||||||||||||  || ||||   |||||| |    
T  19897363 tactttcaaagtaacatattttaatttaatttataatgatgagaaatgcaccaatagttaattaggctattttagtaaaagtgtcatgtctctagacacc 19897462  T
Q  369 ataattacattttttaatatgtgtgtaaaaaatttaagcgacactcattttaaa 422  Q
    || |||  |||| ||||||||||||||| ||  |||| | ||||||||||||||    
T  19897463 attattgtatttcttaatatgtgtgtaacaaccttaaacaacactcattttaaa 19897516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 615
Target Start/End: Original strand, 13434458 - 13434597
Alignment:
Q  476 ctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatc 575  Q
    ||||||||||||  | ||| | |||||| ||| ||||||||||||||||||  | |||||| ||| ||||||| | ||||||| || ||||||| | |||    
T  13434458 ctgccttagctagttcatgggtaacctcttttacttgtctcctaataaacttaacatgagagtttgttaaaaatgaattacaaaacgggatactattatc 13434557  T
Q  576 cattatggatccaaattcggtgctatctcatctacctttg 615  Q
    ||| |||||  |||| |||||| |||||||| | ||||||    
T  13434558 cataatggagtcaaactcggtgatatctcatttgcctttg 13434597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 49877265 - 49877324
Alignment:
Q  290 tactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaa 349  Q
    |||||||||||||||||||||||||| ||||||||   || |||||||||||||||||||    
T  49877265 tactttaatttataatgatgggaaatgcaccaatagtcaataagactattttagtaaaaa 49877324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 435
Target Start/End: Original strand, 48901889 - 48901949
Alignment:
Q  376 cattttttaatatgtgtgtaaaaaatttaagcgacactcatttt-aaacggaagaaatata 435  Q
    ||||| ||||||||| ||||||||| |||| ||||||||||||| ||||||||||||||||    
T  48901889 catttcttaatatgtatgtaaaaaacttaaacgacactcattttaaaacggaagaaatata 48901949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 374 - 422
Target Start/End: Complemental strand, 50646111 - 50646063
Alignment:
Q  374 tacattttttaatatgtgtgtaaaaaatttaagcgacactcattttaaa 422  Q
    ||||||||||||||||||||||||||  |||| ||||||||||||||||    
T  50646111 tacattttttaatatgtgtgtaaaaatcttaaacgacactcattttaaa 50646063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 471 - 546
Target Start/End: Complemental strand, 26307452 - 26307377
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    |||||||||| |||||||   ||| |||||||||||| |||| |||||||||||||||| | |||| |||||||||    
T  26307452 tgtggctgccctagctaatgcatgtgcaacctcatttacttgcctcctaataaactcgacaggagagtttattaaa 26307377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 496 - 702
Target Start/End: Original strand, 14504134 - 14504339
Alignment:
Q  496 gcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatccattatggatccaaattcgg 595  Q
    ||||||||||| ||||| |||||||||||||||| |||||| ||| ||||  | || |||||  | |||||| |   |||||| ||  | ||||||||||    
T  14504134 gcaacctcattcgcttgcctcctaataaactcgacatgagaattttttaagtatgtgttacagaagtggatattactatccataataaaaccaaattcgg 14504233  T
Q  596 tgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagttcattgatccaccgaattg 695  Q
    ||  |||||    ||||||||  ||||||||| ||| | ||||  | || ||||| ||||||||| |||||||| |||||||| |  |||||||||| ||    
T  14504234 tgacatctccatgacctttgttgaaataatcagctattcttttaaagtcaacctcgaaatcaaca-tttgtgagttgaagttcttgtatccaccgaagtg 14504332  T
Q  696 catgata 702  Q
    |||||||    
T  14504333 catgata 14504339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 376 - 435
Target Start/End: Original strand, 48903468 - 48903528
Alignment:
Q  376 cattttttaatatgtgtgtaaaaaatttaagcgacactcattt-taaacggaagaaatata 435  Q
    ||||| ||||||||| ||||||||| |||| ||||||||||||  ||||||||||||||||    
T  48903468 catttcttaatatgtatgtaaaaaacttaaacgacactcatttaaaaacggaagaaatata 48903528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 546
Target Start/End: Original strand, 2651797 - 2651872
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    |||||||||| ||||||   |||| ||||||||||| | ||| |||||||||||||||| |||||| ||| |||||    
T  2651797 tgtggctgccctagctagtgtatgtgcaacctcattcgtttgcctcctaataaactcgacatgagagtttgttaaa 2651872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 517
Target Start/End: Original strand, 5561699 - 5561738
Alignment:
Q  478 gccttagctaacttatgagcaacctcatttgcttgtctcc 517  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  5561699 gcctttgctaacttatgggcaacctcatttgcttgtctcc 5561738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 653 - 772
Target Start/End: Original strand, 13434623 - 13434740
Alignment:
Q  653 aatcaacattttgtgagctgaagttcattgatccaccgaattgcatgataaaagtctcaaagcttctccaatgtcaactggacacagtggtgaaaaccac 752  Q
    ||||||||||| |||||||||||||||| |||||||| ||| | ||| | ||| || ||||| ||||| || ||||||||  |||| |||   |||||||    
T  13434623 aatcaacattt-gtgagctgaagttcatggatccaccaaatagaatggt-aaattcccaaagattctctaacgtcaactgagcacaatggactaaaccac 13434720  T
Q  753 atggtcttggaacgaacatg 772  Q
    |||||||| |||| ||||||    
T  13434721 atggtctttgaacaaacatg 13434740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 517
Target Start/End: Original strand, 17058814 - 17058853
Alignment:
Q  478 gccttagctaacttatgagcaacctcatttgcttgtctcc 517  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  17058814 gcctttgctaactcatgagcaacctcatttgcttgtctcc 17058853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 663
Target Start/End: Complemental strand, 21793984 - 21793939
Alignment:
Q  618 aaaataatcaactactgttttcgaatctacctcaaaatcaacattt 663  Q
    ||||||||||||||||  |||||| || ||||||||||||||||||    
T  21793984 aaaataatcaactacttgtttcgagtcaacctcaaaatcaacattt 21793939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 9e-29; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 250 - 419
Target Start/End: Complemental strand, 9420170 - 9420001
Alignment:
Q  250 taattattattatgtatattactttcaaagcatcgtattctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaa 349  Q
    ||||||||||||||   | ||||||||||| | |  ||| |||||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||     
T  9420170 taattattattatgcgcactactttcaaagtaccacattttactttaatttataatgatgggaaatgcaccaatagttaacaaggctattttagtaaaag 9420071  T
Q  350 ggtaatgttcttagacaacataattacattttttaatatgtgtgtaaaaaatttaagcgacactcatttt 419  Q
     || |||||  |||||||||  ||| ||||| |||||||||||| || || ||||| |||||||||||||    
T  9420070 tgtcatgtttatagacaacactattgcatttcttaatatgtgtggaacaactttaaacgacactcatttt 9420001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 471 - 699
Target Start/End: Complemental strand, 3989599 - 3989372
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||| |||||| ||| ||||| |||||||||||||||||||  ||||||||||| | |||||| ||| ||||| ||| ||||||  | ||||||||     
T  3989599 tgtggctaccttagataatttatgggcaacctcatttgcttgtcgtctaataaactccacatgagagtttgttaaataggaattacataattggatacta 3989500  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
      |||||| ||||| | ||| | |||| ||||||  | || ||| | |||||||||| ||||| |||||||||| | ||||||||||||| ||| ||||     
T  3989499 ctatccataatggaacgaaacttggtgatatctccacgacttttattaaaataatcagctactattttcgaatcaatctcaaaatcaaca-tttatgagt 3989401  T
Q  671 tgaagttcattgatccaccgaattgcatg 699  Q
    ||||||| ||  |||||||||||||||||    
T  3989400 tgaagtttatgtatccaccgaattgcatg 3989372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 471 - 702
Target Start/End: Complemental strand, 7995262 - 7995032
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||| | ||| ||||| ||||||| |||  || |||||||||||| |||||| ||| ||||| ||| | || || | ||||||||     
T  7995262 tgtggctgccttagctaattcatgtgcaacttcatttgtttgcttcataataaactcgacatgagagtttgttaaataggaactataaaattggatacta 7995163  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
      |||||| ||||| ||||||||| ||  ||||| || | ||||||  ||||||||| ||||| |||||||||| |||| |||||||||  ||||  ||     
T  7995162 ctatccataatggaaccaaattcgatgacatctcctcgatctttgttgaaataatcagctactcttttcgaatcaacctaaaaatcaac-gtttgcaagt 7995064  T
Q  671 tgaagttcattgatccaccgaattgcatgata 702  Q
    ||||||||||| ||||||||||||| ||||||    
T  7995063 tgaagttcatttatccaccgaattggatgata 7995032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 622 - 779
Target Start/End: Complemental strand, 12247013 - 12246858
Alignment:
Q  622 taatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagttcattgatccaccgaattgcatgataaaagtctcaaagcttctcc 721  Q
    |||||||||||| |||| ||||| | |||||||||||||||| ||||||||||||||||  ||||||||||||||||| | |||||||||||||||||||    
T  12247013 taatcaactactctttttgaatcaatctcaaaatcaacattt-gtgagctgaagttcatgaatccaccgaattgcatggt-aaagtctcaaagcttctcc 12246916  T
Q  722 aatgtcaactggacacagtggtgaaaaccacatggtcttggaacgaacatggtttcct 779  Q
    |   ||||||  ||||||||| | ||||||||| || || ||   |||||||||||||    
T  12246915 agcatcaactaaacacagtggagtaaaccacattgtttttgagataacatggtttcct 12246858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 499 - 722
Target Start/End: Complemental strand, 25133221 - 25133001
Alignment:
Q  499 acctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatccattatggatccaaattcggtgc 598  Q
    ||||||||| |||| |||||||||||||| |||||||| ||||||||| ||| ||||||  | ||||||||   |||||| ||||| ||||| ||  ||     
T  25133221 acctcattttcttgcctcctaataaactcaatatgagagtttattaaataggaattacataattggatactactatccataatggaaccaaactctctga 25133122  T
Q  599 tatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagttcattgatccaccgaattgcat 698  Q
     |||||  |||||||||| |||||||| | ||||| |||||||||| || |||||| ||||| ||| |||| | | |||||| |||||||| ||||||||    
T  25133121 catctcccctacctttgttaaaataatgagctactattttcgaatcaacttcaaaaccaaca-tttatgag-ttatgttcatggatccaccaaattgcat 25133024  T
Q  699 gataaaagtctcaaagcttctcca 722  Q
    | || || |||| |||||||||||    
T  25133023 ggtacaa-tctccaagcttctcca 25133001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 471 - 701
Target Start/End: Original strand, 28161946 - 28162175
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||| |||||||||| |||| ||||||||||||||||| |||||||||||||||| |||||| ||| ||||| |   ||||||  |    | |||     
T  28161946 tgtggctgtcttagctaacgtatgtgcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataaacattacagaagcttaaacta 28162045  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
      |||||| ||||| ||||| ||||||  |||||  | ||||||||  ||||||||| ||||| |||| || || ||||| ||||||||| |||| |||     
T  28162046 ctatccataatggagccaaactcggtgacatctccacgacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaaca-tttgagagt 28162144  T
Q  671 tgaagttcattgatccaccgaattgcatgat 701  Q
    ||||||||||  ||||||||||| |||||||    
T  28162145 tgaagttcatgtatccaccgaatcgcatgat 28162175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 167 - 348
Target Start/End: Original strand, 4529840 - 4530021
Alignment:
Q  167 tttagcaaaaataaattgttttaaa-taaatgtcgttttaactttttcaatgtagtattaattaactattttcattagtatctctaattattattatgta 265  Q
    |||||||||||||| |||||||||| | |||||| || | |||||| ||||||| |||||||||  | |||||| ||| | |  |||||||||||||  |    
T  4529840 tttagcaaaaataatttgttttaaaatgaatgtcattctcactttt-caatgtactattaattactttttttcaataggacccttaattattattatcca 4529938  T
Q  266 tattactttcaaagcatcgtattctactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaa 348  Q
     |  |||||||| | ||| | || ||||||||||||||||||||  |||| ||||||||| |||| |||||||||||||||||    
T  4529939 cacaactttcaacgtatcattttgtactttaatttataatgatgacaaatgcaccaataactaacgagactattttagtaaaa 4530021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 471 - 701
Target Start/End: Original strand, 25732329 - 25732558
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||| ||||||||||||   ||| ||||||||||||||||  |||||||||||||||| |||||| ||| ||||| |   ||||||  |    | |||     
T  25732329 tgtggttgccttagctaaagcatgtgcaacctcatttgcttacctcctaataaactcgacatgagagtttgttaaatattcattacagaagcttaaacta 25732428  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
      |||||| ||||| ||||| |||||| ||||||  | ||||||||  ||||||||| ||||| |||| || || ||||| ||||||||| |||| |||     
T  25732429 ctatccataatggagccaaactcggtgatatctccacgacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaaca-tttgagagt 25732527  T
Q  671 tgaagttcattgatccaccgaattgcatgat 701  Q
    ||||||||||  ||||||||||| |||||||    
T  25732528 tgaagttcatgaatccaccgaatcgcatgat 25732558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 293 - 426
Target Start/End: Original strand, 32414837 - 32414970
Alignment:
Q  293 tttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaaggtaatgttcttagacaacataattacattttttaatatgtgt 392  Q
    |||||||||  ||||||| |||| || |||||  ||||||| ||||||||| ||||  || ||||   |||||||||| ||||||||| |||||||||||    
T  32414837 tttaatttaggatgatggaaaatgcatcaatagttaacaaggctattttaggaaaagtgtcatgtctatagacaacattattacatttcttaatatgtgt 32414936  T
Q  393 gtaaaaaatttaagcgacactcattttaaacgga 426  Q
    |||| ||  |||| ||||||| |||| |||||||    
T  32414937 gtaacaaccttaaacgacacttatttaaaacgga 32414970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 491 - 527
Target Start/End: Original strand, 14848426 - 14848462
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    |||||||||||||||||||||||||||||||||||||    
T  14848426 tatgagcaacctcatttgcttgtctcctaataaactc 14848462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 22699490 - 22699548
Alignment:
Q  290 tactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaa 348  Q
    |||||||||||||||||||| ||||| |||||| || |||||||  |||||||||||||    
T  22699490 tactttaatttataatgatgagaaatgcaccaacaattaacaaggttattttagtaaaa 22699548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 376 - 428
Target Start/End: Complemental strand, 6115975 - 6115922
Alignment:
Q  376 cattttttaatatgtgtgtaaaaaatttaagcgacactcatttt-aaacggaag 428  Q
    ||||||||||||||||||||||||  |||| ||||||||||||| |||||||||    
T  6115975 cattttttaatatgtgtgtaaaaaccttaaacgacactcattttgaaacggaag 6115922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 517
Target Start/End: Complemental strand, 10544031 - 10543992
Alignment:
Q  478 gccttagctaacttatgagcaacctcatttgcttgtctcc 517  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  10544031 gccttagctaatttatgaacaacctcatttgcttgtctcc 10543992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 479 - 517
Target Start/End: Original strand, 4424661 - 4424699
Alignment:
Q  479 ccttagctaacttatgagcaacctcatttgcttgtctcc 517  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  4424661 cctttgctaacttatgggcaacctcatttgcttgtctcc 4424699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 96194 - 96157
Alignment:
Q  478 gccttagctaacttatgagcaacctcatttgcttgtct 515  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  96194 gccttagctaacttatgagcaacttcatttgtttgtct 96157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 471 - 702
Target Start/End: Original strand, 13065460 - 13065690
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||   |||| ||||||||||| ||||| |||||| ||||||||| |||||| ||| ||||||| |    |||  | ||||| ||     
T  13065460 tgtggctgccttagctagagtatgtgcaacctcattcgcttgcctcctagtaaactcgacatgagagtttgttaaaaatgaccgacagaaatggatgcta 13065559  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
       ||||||||||| ||||||||||||  |||||  || |||||||  ||||||||  |||||  |||||| || || ||||||||||||||||  |||     
T  13065560 ctgtccattatggaaccaaattcggtgacatctccactgcctttgttgaaataatccgctactcgtttcgagtcaacttcaaaatcaacatttt-cgagt 13065658  T
Q  671 tgaagttcattgatccaccgaattgcatgata 702  Q
    |||||||||| |||||||||||||||||||||    
T  13065659 tgaagttcatggatccaccgaattgcatgata 13065690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 562 - 699
Target Start/End: Complemental strand, 31291700 - 31291564
Alignment:
Q  562 tggatactttcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacat 661  Q
    |||||||| | |||||| ||||| ||||| |||||| ||||||  |||||| | | |||||||||||||||| ||||| | || |||||||||||||||     
T  31291700 tggatactattatccatgatggaaccaaactcggtgatatctcccctacctctattaaaataatcaactacttttttcaattcaacctcaaaatcaaca- 31291602  T
Q  662 tttgtgagctgaagttcattgatccaccgaattgcatg 699  Q
    |||||||||||||||||||  |||||| ||||||||||    
T  31291601 tttgtgagctgaagttcatgtatccactgaattgcatg 31291564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 471 - 656
Target Start/End: Original strand, 38640083 - 38640266
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||||||| |||||| |||||||||||||| |   || ||| ||||||||| || |||||| ||| | |||||| |||||||| | || ||  |     
T  38640083 tgtggctgccttaactaactcatgagcaacctcatctatatgcctcgtaataaacttgacatgagagttt-taaaaaagatattacaaaattgaatgtta 38640181  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatc 656  Q
    | |||||| || |||| |||||| ||| | |||| ||||||||||| |||| ||||| |||||||||||||||||| |||||||||    
T  38640182 ttatccataatagatctaaattcagtgatgtctcctctacctttgttaaaa-aatcagctactgttttcgaatctatctcaaaatc 38640266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 471 - 702
Target Start/End: Complemental strand, 8724787 - 8724557
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||  ||||| ||||||||||| ||||| |||||| ||||||||| |||||| ||| ||||||  |    |||  | || || ||     
T  8724787 tgtggctgccttagctagattatgtgcaacctcattcgcttgcctcctagtaaactcgacatgagagtttgttaaaagtgaccgacagaaatgaatgcta 8724688  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
       |||||||| || ||||||||||||  |||||  | ||||||||  ||||||||  |||||  |||||| || || ||||||||||||||||  |||     
T  8724687 ctgtccattatagaaccaaattcggtgacatctccacgacctttgttgaaataatctgctactcgtttcgagtcaacttcaaaatcaacatttt-cgagt 8724589  T
Q  671 tgaagttcattgatccaccgaattgcatgata 702  Q
    |||| ||||| |||||||||||||||||||||    
T  8724588 tgaaattcatggatccaccgaattgcatgata 8724557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 209 - 348
Target Start/End: Complemental strand, 1969503 - 1969364
Alignment:
Q  209 ttttcaatgtagtattaattaactattttcattagtatctctaattattattatgtatattactttcaaagcatcgtattctactttaatttataatgat 308  Q
    ||||||||||| |||||||||  | ||| || ||||| |  |||||||||||||  | |  |||| ||||| ||||| || ||| |||||||||||||||    
T  1969503 ttttcaatgtactattaattacttttttccaatagtacccttaattattattattcacacaacttccaaagtatcgttttgtacattaatttataatgat 1969404  T
Q  309 gggaaatacaccaataaataacaagactattttagtaaaa 348  Q
    |  |||||||||||||| || | |||||||||||||||||    
T  1969403 gacaaatacaccaataactagcgagactattttagtaaaa 1969364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 695
Target Start/End: Complemental strand, 18521853 - 18521640
Alignment:
Q  480 cttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatccatt 579  Q
    |||| |||| ||||| ||||||||||||||||| ||  |||||||||  | |||||| ||| ||||| ||| ||||||  | ||||||||   ||  ||     
T  18521853 cttatctaatttatgggcaacctcatttgcttgccttgtaataaacttcacatgagaatttgttaaatagggattacagaattggatactactatttata 18521754  T
Q  580 atggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagctgaagttca 679  Q
    ||| | |||||||| ||| |||||| || ||||||||  ||||||| | ||||| ||||| |||| |||||||| ||||||||| |||||||||||| ||    
T  18521753 atgaa-ccaaattcagtgatatctcctcaacctttgttgaaataattagctacttttttctaatcaacctcaaagtcaacattt-gtgagctgaagtcca 18521656  T
Q  680 ttgatccaccgaattg 695  Q
    |  | |||||||||||    
T  18521655 tgtacccaccgaattg 18521640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 294 - 405
Target Start/End: Complemental strand, 39803740 - 39803629
Alignment:
Q  294 ttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaaaggtaatgttcttagacaacataattacattttttaatatgtgtg 393  Q
    ||||||||||||||||| |||| || |||||  ||||||  |||||||||||||| | | |||||  |||||||||| |||| |||| ||||||||||||    
T  39803740 ttaatttataatgatggaaaatgcatcaatagttaacaaagctattttagtaaaaggatcatgtttatagacaacattattaaatttcttaatatgtgtg 39803641  T
Q  394 taaaaaatttaa 405  Q
    ||| || |||||    
T  39803640 taacaactttaa 39803629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 546
Target Start/End: Original strand, 19609145 - 19609220
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    ||||||| | ||||||||   ||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||    
T  19609145 tgtggctactttagctaaaacatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaa 19609220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 686
Target Start/End: Complemental strand, 20587714 - 20587500
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||||||||||||   ||| |||||||||||| |||  |||||||||||||||| |||||| |||  ||||  ||| |||||  | |||| |||     
T  20587714 tgtggctgccttagctaaagcatgtgcaacctcattttcttacctcctaataaactcgacatgagagtttgataaattggtgttacagaattggacacta 20587615  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
      |||||| || || || || ||||||  |||||  | ||| ||||  ||||||||| ||||| |||| || |||||||| ||||||||| |||| |||     
T  20587614 ctatccatgatagagccgaactcggtgacatctccacgaccattgttgaaataatcagctactcttttagagtctacctcgaaatcaaca-tttgagagt 20587516  T
Q  671 tgaagttcattgatcc 686  Q
    |||||||||| |||||    
T  20587515 tgaagttcatggatcc 20587500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 471 - 702
Target Start/End: Complemental strand, 20706193 - 20705963
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||||||||||||   ||| ||||||||||||||||| || ||||||||||||| |||||| |||  ||||  ||| |||||  | |||| |||     
T  20706193 tgtggctgccttagctaaagcatgtgcaacctcatttgcttgccttctaataaactcgacatgagagtttgataaattggtgttacagaattggacacta 20706094  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
      |||||| || || || || ||||||  |||||  | ||| ||||  |||||| || ||||| |||| || |||||||| ||||||||| |||| |||     
T  20706093 ctatccatgatagagccgaactcggtgacatctccacgaccattgttgaaataaccagctactcttttagagtctacctcgaaatcaaca-tttgagagt 20705995  T
Q  671 tgaagttcattgatccaccgaattgcatgata 702  Q
    ||||||||||  |||||| |||| || |||||    
T  20705994 tgaagttcatgtatccactgaatcgcgtgata 20705963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 493 - 663
Target Start/End: Original strand, 36961986 - 36962156
Alignment:
Q  493 tgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactttcatccattatggatccaaatt 592  Q
    |||||||||||||||||||| |||||||||||||| | |||||| ||| ||||  |  | | |||  | |||||||| | |||||| ||||| || ||||    
T  36961986 tgagcaacctcatttgcttgcctcctaataaactcaacatgagagtttgttaagtaactgtgacaccattggatactcttatccataatggagccgaatt 36962085  T
Q  593 cggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattt 663  Q
    ||||| ||||||     |||||||  ||||||||| ||||| |||| || || ||||| ||||||||||||    
T  36962086 cggtgatatctccatggcctttgttgaaataatcagctactcttttagagtcaacctcgaaatcaacattt 36962156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 241 - 346
Target Start/End: Original strand, 7144896 - 7145001
Alignment:
Q  241 tagtatctctaattattattatgtatattactttcaaagcatcgtattctactttaatttataatgatgggaaatacaccaataaataacaagactattt 340  Q
    |||||||  ||||||||||||| || |  |||| ||||| ||| | || ||||||||||||||||||||  |||| ||||||||| || | |||||||||    
T  7144896 tagtatccttaattattattatctacacaacttccaaagtatcattttgtactttaatttataatgatgacaaatgcaccaataactagcgagactattt 7144995  T
Q  341 tagtaa 346  Q
    ||||||    
T  7144996 tagtaa 7145001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 663
Target Start/End: Complemental strand, 42765356 - 42765164
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||| ||||   | |||||||||||||||||||| |||||||||||||| | |||||| ||| ||||  |  | | |||  | ||||||||     
T  42765356 tgtggctgccttggctagagtgtgagcaacctcatttgcttgcctcctaataaactcaacatgagagtttgttaagtaattgtgacaccattggatactc 42765257  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattt 663  Q
    | |||||| ||||| || |||||| || ||||||     |||||||  ||||||||| ||||| |||| || || ||||| ||||||||||||    
T  42765256 ttatccataatggagccgaattcgatgatatctccatggcctttgttgaaataatcagctactcttttagagtcaacctcgaaatcaacattt 42765164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 491 - 527
Target Start/End: Complemental strand, 11123654 - 11123618
Alignment:
Q  491 tatgagcaacctcatttgcttgtctcctaataaactc 527  Q
    ||||| |||||||||||||||||||||||||||||||    
T  11123654 tatgaacaacctcatttgcttgtctcctaataaactc 11123618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 546
Target Start/End: Original strand, 11619161 - 11619236
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    ||||||||||||| ||||   ||| ||||||||||| | ||| |||||||||||||||| |||||| ||| |||||    
T  11619161 tgtggctgccttaactaatgcatgcgcaacctcattcgtttgcctcctaataaactcgacatgagagtttgttaaa 11619236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 492 - 527
Target Start/End: Complemental strand, 19237713 - 19237678
Alignment:
Q  492 atgagcaacctcatttgcttgtctcctaataaactc 527  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19237713 atgagcaacctcatttgcttgtcgcctaataaactc 19237678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 21634293 - 21634339
Alignment:
Q  376 cattttttaatatgtgtgtaaaaaatttaagcgacactcattttaaa 422  Q
    ||||| |||||||||||||||||| ||||| ||||| ||||||||||    
T  21634293 catttcttaatatgtgtgtaaaaactttaaacgacattcattttaaa 21634339  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 376 - 422
Target Start/End: Original strand, 21642540 - 21642586
Alignment:
Q  376 cattttttaatatgtgtgtaaaaaatttaagcgacactcattttaaa 422  Q
    ||||| |||||||||||||||||| ||||| ||||| ||||||||||    
T  21642540 catttcttaatatgtgtgtaaaaactttaaacgacattcattttaaa 21642586  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 28798140 - 28798198
Alignment:
Q  290 tactttaatttataatgatgggaaatacaccaataaataacaagactattttagtaaaa 348  Q
    ||||||||||||||||||||  |||| ||| ||||| || | |||||||||||||||||    
T  28798140 tactttaatttataatgatgacaaatgcactaataactagcgagactattttagtaaaa 28798198  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 27797959 - 27798004
Alignment:
Q  377 attttttaatatgtgtgtaaaaaatttaagcgacactcattttaaa 422  Q
    |||||||||||||| |||||||||||||| ||||| | ||||||||    
T  27797959 attttttaatatgtatgtaaaaaatttaaacgacatttattttaaa 27798004  T

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Target: scaffold1689 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 701
Target Start/End: Complemental strand, 990 - 761
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||| |   ||||||  | | ||  ||     
T  990 tgtggctgccttagctaaggtatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaataatcattacagaaattgaagcta 891  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
    | |||||| ||||| ||||| ||||||  |||||  | ||||||||  ||||||| | ||||| |||| ||||| ||||| |||| |||| |||| |||     
T  890 ttatccataatggaaccaaactcggtgacatctccacgacctttgttgaaataattagctactctttttgaatcaacctcgaaattaaca-tttgagagt 792  T
Q  671 tgaagttcattgatccaccgaattgcatgat 701  Q
    ||||||||||   |||||||||| |||||||    
T  791 tgaagttcatgagtccaccgaatcgcatgat 761  T

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Target: scaffold0114 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 471 - 701
Target Start/End: Original strand, 11522 - 11751
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    ||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||| |   ||||||  |    | |||     
T  11522 tgtggctgccttagctaaagtatgagcaacctcatttgcttgcctcctaataaactcgacatgagagtttgttaaatattcattacagaagcttaaacta 11621  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
      | |||| ||||| ||||| ||||||  |||||  ||||||||||  ||||||||| ||||| |||| || || ||||| ||||||||| |||| |||     
T  11622 ctacccataatggagccaaactcggtgacatctccactacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaaca-tttgagagt 11720  T
Q  671 tgaagttcattgatccaccgaattgcatgat 701  Q
    ||||||||||  ||||||||||| |||||||    
T  11721 tgaagttcatgtatccaccgaatcgcatgat 11751  T

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Target: scaffold0251 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 471 - 702
Target Start/End: Original strand, 2226 - 2456
Alignment:
Q  471 tgtggctgccttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatactt 570  Q
    |||||||||||||||||   |||| | ||||||||| ||||| |||||| ||||||||| |||||| ||| ||||||| |    |||  | ||||| ||     
T  2226 tgtggctgccttagctagagtatgtgaaacctcattcgcttgcctcctagtaaactcgacatgagagtttgttaaaaatgaccgacagaaatggatgcta 2325  T
Q  571 tcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtgagc 670  Q
       ||||||||||| ||||||||||||  |||||  || |||||||  ||||||||  |||||  |||||| || || ||||||||||||||||  |||     
T  2326 ctgtccattatggaaccaaattcggtgacatctccactgcctttgttgaaataatccgctactcgtttcgagtcaacttcaaaatcaacatttt-cgagt 2424  T
Q  671 tgaagttcattgatccaccgaattgcatgata 702  Q
    |||||||||| |||||||||||||||||||||    
T  2425 tgaagttcatggatccaccgaattgcatgata 2456  T

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Target: scaffold0445 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 471 - 701
Target Start/End: Original strand, 14011 - 14242
Alignment:
Q  471 tgtggctgccttagctaact--tatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaaaaggtattacaatactggatac 568  Q
    ||||||||||||||||||    ||||||||||||||||| |||| |||||||||||||||| |||||| ||| ||||  |   ||||||  | |  | ||    
T  14011 tgtggctgccttagctaaaaggtatgagcaacctcattttcttgcctcctaataaactcgacatgagagtttgttaagtaatcattacagaaatttaaac 14110  T
Q  569 tttcatccattatggatccaaattcggtgctatctcatctacctttgtcaaaataatcaactactgttttcgaatctacctcaaaatcaacattttgtga 668  Q
    | | |||||| ||||||||||| ||||||  |||||  | ||||||||  ||||||||| ||||| |||| || || ||||| ||||||||| |||| ||    
T  14111 tattatccataatggatccaaactcggtgacatctccacgacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaaca-tttgaga 14209  T
Q  669 gctgaagttcattgatccaccgaattgcatgat 701  Q
    | ||||||||||  |||||| |||| |||||||    
T  14210 gttgaagttcatgaatccactgaatcgcatgat 14242  T

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Target: scaffold0388 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 480 - 546
Target Start/End: Original strand, 14453 - 14519
Alignment:
Q  480 cttagctaacttatgagcaacctcatttgcttgtctcctaataaactcgatatgagattttattaaa 546  Q
    |||||||||  |||| ||||||||||||||||| ||||||||||| |||| |||||| ||| |||||    
T  14453 cttagctaaagtatgtgcaacctcatttgcttgcctcctaataaattcgacatgagagtttgttaaa 14519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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