View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4893-Insertion-6 (Length: 398)
Name: NF4893-Insertion-6
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4893-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 355
Target Start/End: Original strand, 12998827 - 12999176
Alignment:
| Q |
7 |
aaaaatatcgac-attttttaaaattgattatcggggaatttattaaaatatttaatgtgaatatttgttttgctannnnnnnnaaagaaaaaattgatt |
105 |
Q |
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| T |
12998827 |
aaaaatatcgactattttttaaaattgattatcggggaatttattaaagtatttaatgtgaatatttgttttgctattttttttaaagaaaaaattgatt |
12998926 |
T |
|
| Q |
106 |
ttctatgcaaacgtgtgtgtatgggagagacccaagatgaaacgctgatttggtcccacgcaatcagagcatttggcaccgtcagatccatctcatcagt |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12998927 |
ttctatgcaaacgtgtgtgtatgggagagacccaagatgaaacgctgatttggtcccacgcaatcagagcatttgacaccgtcagatccatctcatcagt |
12999026 |
T |
|
| Q |
206 |
ttcttagtcaaggcgccacataaaatgggacccacaatcccaccttttaggttgcctaaacggattttccgctcgtcttcaattgacttaacgccatatt |
305 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12999027 |
ttctgagtcaaggcgccacataaaatgggacccacaatcccaccttttaggttgcctaaacggattttccgctcgtcttcaattgacttaacgctatatt |
12999126 |
T |
|
| Q |
306 |
gcaataaataattagatttagtgtattacacgtattataaaatttacgcc |
355 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12999127 |
gcaataaataattagatttagtgtattacacgtattataaaatttacgcc |
12999176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 7 - 355
Target Start/End: Original strand, 13073467 - 13073816
Alignment:
| Q |
7 |
aaaaatatcgac-attttttaaaattgattatcggggaatttattaaaatatttaatgtgaatatttgttttgctannnnnnnnaaagaaaaaattgatt |
105 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| ||| |
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| T |
13073467 |
aaaaatatcgactattttttaaaattgattatcggggaatttattaaagtatttaatgtgaatatttgttttgctattttttttacagaaaaaattaatt |
13073566 |
T |
|
| Q |
106 |
ttctatgcaaacgtgtgtgtatgggagagacccaagatgaaacgctgatttggtcccacgcaatcagagcatttggcaccgtcagatccatctcatcagt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13073567 |
ttctatgcaaacgtgtgtgtatgggagagacccaagatgaaacgctgatttggtcccacgcaatcagagcatttggcaccgtcagatccatctcatcagt |
13073666 |
T |
|
| Q |
206 |
ttcttagtcaaggcgccacataaaatgggacccacaatcccaccttttaggttgcctaaacggattttccgctcgtcttcaattgacttaacgccatatt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13073667 |
ttcttagtcaaggcgccacataaaatgggacccacaatcccaccttttaggttgcctaaacggattttccgctcgtcttcaattgacttaacgctatatt |
13073766 |
T |
|
| Q |
306 |
gcaataaataattagatttagtgtattacacgtattataaaatttacgcc |
355 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13073767 |
gcaataaataattagatttagtgtattacacgtattataaaatttacgcc |
13073816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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