View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4893-Insertion-9 (Length: 331)
Name: NF4893-Insertion-9
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4893-Insertion-9 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 26806015 - 26805691
Alignment:
| Q |
7 |
atataaaccctagccattctctcaaaacctgtacaaaattattattgtgaaaacgaaaaagttactaatcatcacccnnnnnnnnnnnnnnnnntttgag |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26806015 |
atataaaccctagccattctctcaaaacctgtacaaaattattattgtgaaaacgaaaaagttactaatcatcacccaaaaaaaaaacgaaaaatttgag |
26805916 |
T |
|
| Q |
107 |
aagaaaatgtacgaaattttacagtttgggaaatcagagatcacctgcaagtgaaagaattgtacagaattctctatgatcgtgagtgagcgtgttaagt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26805915 |
aagaaaatgtacgaaattttacagtttgggaaatcagagatcacctgcaagtgaaagaattgtacagaattctctatgatcgtgagtgagcgtgttaagt |
26805816 |
T |
|
| Q |
207 |
ccctagaatttctaatgcttcaaacgatggcgttttgggcttattagttttagttgggtattctaataatttgcttttaaacccccttcttactttcttc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26805815 |
ccctagaatttctaatgcttcaaacgatggcgttttgggcttattagttttagttgggtattctaataatttgcttttaaacccccttcttactttcttc |
26805716 |
T |
|
| Q |
307 |
acttttggtctagatatttaaaata |
331 |
Q |
| |
|
|||||||| |||||||||||||||| |
|
|
| T |
26805715 |
acttttgggctagatatttaaaata |
26805691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University