View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4893_high_5 (Length: 278)
Name: NF4893_high_5
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4893_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 45067674 - 45067922
Alignment:
| Q |
11 |
cagagacaatgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttagcaatttagtcctt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45067674 |
cagagacaatgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggcaaaaatgggaaaaacaagaagtggttagcaatttagtcctt |
45067773 |
T |
|
| Q |
111 |
gcaattgaaccttttattcaatatcaatgacataaactccattaagttgaaaaataataattagaatttggacnnnnnnntctaaacgaatttctaaatg |
210 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
45067774 |
gcaactgaaccttttattcaatatgaatgacataaactccattaagttgaaaaataataattagaatttggacaaaaaagtctaaactaatttctaaatg |
45067873 |
T |
|
| Q |
211 |
attgaatgtctaatggaccatgaatacattaccagggtctatgccatct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45067874 |
attgaatgtctaatggaccatgaatacattaccagggtctatgccatct |
45067922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 45078464 - 45078536
Alignment:
| Q |
11 |
cagagacaatgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaa |
83 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
45078464 |
cagagacaatgaagttgtcttcaattctaacgtttgtacatgagtctgttaagaaggggaaaaatgggaaaaa |
45078536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 45075245 - 45075384
Alignment:
| Q |
22 |
tagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttagcaatttagtccttgcaattgaacc |
121 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||| |||| | |||||| ||||||||||||| |||| | |||||| ||||||||||||| || |
|
|
| T |
45075245 |
tagttgtcttcaattctgacgtttgtacatgaatctggtaagta---aaaaaaatggaaaaacaagaagtggtcggtaatttactccttgcaattgagcc |
45075341 |
T |
|
| Q |
122 |
ttttattcaatatcaatgacataaactccattaagttgaaaaa |
164 |
Q |
| |
|
| || |||| ||| || | ||||| |||||| ||||| |||| |
|
|
| T |
45075342 |
tcttgttcagtatgaaggtcataagttccatttagttggaaaa |
45075384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 34505009 - 34505095
Alignment:
| Q |
11 |
cagagacaatgtagttgtcttcaattagaacgtttgtacacgagtctgttaagaagggaaaaaatgggaaaaacaagaactggttag |
97 |
Q |
| |
|
|||||||||||||||||||||| || |||||| ||| | || ||||||||||||| |||||||| |||| |||| | ||||||| |
|
|
| T |
34505009 |
cagagacaatgtagttgtcttcgatcctaacgttcgtagatgaatctgttaagaaggcgaaaaatggaaaaatcaagcagtggttag |
34505095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University