View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4893_high_6 (Length: 243)
Name: NF4893_high_6
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4893_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 3851942 - 3851720
Alignment:
| Q |
21 |
cttaattagttaaggggttctctctaaatcataaccaatagaaacttctta--acctacgcagtttctaaccagtttccttttccaccatcaacaccact |
118 |
Q |
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| T |
3851942 |
cttaattagttaaggggttctct--aaatcataaccaatagaaacttcttataacctacgcagtttctaaccagtttccttttccaccatcaacaccact |
3851845 |
T |
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| Q |
119 |
ttttctctcttaaatttctttcaataaaccatataataatagattctaggaaattcaccttgactttgcatcatccttttctcttatacctttcatataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3851844 |
ttttctctcttaaatttctttcaataaaccatataataatagattctaggaaattcaccttgactttgcatcatccttttctcttatacctttcatataa |
3851745 |
T |
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| Q |
219 |
atacttagccaaacttgtatttttt |
243 |
Q |
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||||||||||||| ||||||||||| |
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| T |
3851744 |
atacttagccaaagttgtatttttt |
3851720 |
T |
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