View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4893_high_8 (Length: 237)
Name: NF4893_high_8
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4893_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 3851540 - 3851480
Alignment:
| Q |
162 |
ttacatatatttcaagtcctatgaaagtgaagactagtgcttcaaattttagagcacttgt |
222 |
Q |
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| T |
3851540 |
ttacatatatttcaagtcctatgaaagtgaagactagtgcttcaaattttagagcacttgt |
3851480 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 123
Target Start/End: Complemental strand, 3851634 - 3851579
Alignment:
| Q |
68 |
gagatgatgaaaagtgagataaacatgcttggtgttaacaaccatgtgatgaaggg |
123 |
Q |
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| T |
3851634 |
gagatgatgaaaagtgagataaacatgcttggtgttaacaatcatgttatgaaggg |
3851579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3851701 - 3851658
Alignment:
| Q |
1 |
ttcatcaaacaatcaaaaacactaatattttgaatctcttgttc |
44 |
Q |
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| T |
3851701 |
ttcatcaaacaatcaaaaacactaatattttgaatctcttgttc |
3851658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 14917390 - 14917444
Alignment:
| Q |
162 |
ttacatatatttcaagtcctatgaaagtgaagactagtgcttcaaattttagagc |
216 |
Q |
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| T |
14917390 |
ttacatatatttcaagtccagtgaaagtgaagactaatgcttcaaatttcagagc |
14917444 |
T |
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