View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4893_low_1 (Length: 522)
Name: NF4893_low_1
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4893_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 23 - 266
Target Start/End: Original strand, 37137733 - 37137974
Alignment:
| Q |
23 |
aataatagggtaaaacaatggaaatgattgagaaattactcgcaagaagttggatccaatactattatatttcgaaaggcaaagtcgtcaaataggtccc |
122 |
Q |
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| T |
37137733 |
aataatagggtaaaacaatggaaatgattgagaaattactcgcaagaagt-ggatccaatactattatatttcgaaaggcaaagtcgtcaaataggtccc |
37137831 |
T |
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| Q |
123 |
cggtccttcaaaacgcccaaca-annnnnnnngggataccaagacttctcgaatatgaattgtgtcaaaagaaaacgatttaatttgaaaaatagaaggt |
221 |
Q |
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| T |
37137832 |
cggtccttcaaaacgcacaatagtgtttttttgggata-caagacttctcgaatatgaattgtgtcaaaagaaagcgaattaatttgaaaaatagagagt |
37137930 |
T |
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| Q |
222 |
taggctctaataaaaatatacagcataaatttcttgataaatttt |
266 |
Q |
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| T |
37137931 |
tagcctctaa-aaaaatatacaacataaatttcttgataaatttt |
37137974 |
T |
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