View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4893_low_2 (Length: 394)

Name: NF4893_low_2
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4893_low_2
NF4893_low_2
[»] chr7 (9 HSPs)
chr7 (1-130)||(43928261-43928390)
chr7 (223-379)||(43928488-43928644)
chr7 (222-379)||(25599054-25599211)
chr7 (222-379)||(45162001-45162161)
chr7 (222-379)||(29188575-29188734)
chr7 (222-361)||(3688416-3688555)
chr7 (222-302)||(19067669-19067749)
chr7 (267-362)||(21156861-21156956)
chr7 (16-85)||(43940188-43940257)
[»] chr6 (2 HSPs)
chr6 (224-379)||(19311035-19311191)
chr6 (222-301)||(19654002-19654081)
[»] chr4 (2 HSPs)
chr4 (223-379)||(24008402-24008561)
chr4 (222-374)||(5046017-5046169)
[»] chr8 (7 HSPs)
chr8 (225-379)||(25929291-25929445)
chr8 (222-361)||(17725534-17725673)
chr8 (224-379)||(42007545-42007698)
chr8 (223-373)||(28930724-28930874)
chr8 (276-379)||(26395254-26395356)
chr8 (222-302)||(3418357-3418437)
chr8 (245-287)||(26395493-26395535)
[»] chr2 (4 HSPs)
chr2 (268-379)||(33629308-33629419)
chr2 (222-301)||(23343812-23343891)
chr2 (338-379)||(23343973-23344014)
chr2 (310-373)||(36237753-36237817)
[»] chr1 (4 HSPs)
chr1 (251-368)||(4134668-4134785)
chr1 (222-347)||(4433121-4433246)
chr1 (222-302)||(34309170-34309250)
chr1 (222-301)||(23026615-23026694)
[»] chr5 (1 HSPs)
chr5 (261-347)||(22212873-22212959)
[»] chr3 (3 HSPs)
chr3 (222-347)||(13476234-13476359)
chr3 (222-373)||(45081271-45081423)
chr3 (310-373)||(46150599-46150662)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 43928261 - 43928390
Alignment:
Q  1 cgatcgtatgaatattttttccatagtgaagcaaaacaattttctctttcgaggattatataaggaatggattggtttcttaagcttgctgctactgata 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43928261 cgatcatatgaatattttttccatagtgaagcaaaacaattttctctttcgaggattatataaggaatggattggtttcttaagcttgctgctactgata 43928360  T
Q  101 gaccagaagggcctgctccaacaactatca 130  Q
    ||||||||||||||||||||||||||||||    
T  43928361 gaccagaagggcctgctccaacaactatca 43928390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 223 - 379
Target Start/End: Original strand, 43928488 - 43928644
Alignment:
Q  223 cgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacacta 322  Q
    |||||||||||||||| || | ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||        |||||||||||||    
T  43928488 cgttgacaccaaatctcaactattgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatcctttttttcaatcacacacta 43928587  T
Q  323 ttattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattct 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43928588 ttattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattct 43928644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 222 - 379
Target Start/End: Original strand, 25599054 - 25599211
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 321  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  25599054 tcgttgacaccaaatctcaatcgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatcctttttttcaatcacacact 25599153  T
Q  322 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattct 379  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25599154 attattatttttaatgattacaaaacctaaattggaaacataatcctatcataattct 25599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 222 - 379
Target Start/End: Original strand, 45162001 - 45162161
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnn---caatcacac 318  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||           |||||||||    
T  45162001 tcgttgacaccaaatctcaactgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatccttttttttttcaatcacac 45162100  T
Q  319 actattattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattct 379  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45162101 actattattgtttttaatgattacaaaacctaaattggaaacataatcctatcataattct 45162161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 222 - 379
Target Start/End: Complemental strand, 29188734 - 29188575
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnn--caatcacaca 319  Q
    ||||||||||||||||| || ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||          ||||||||||    
T  29188734 tcgttgacaccaaatctcaactgttgatcttatttaatcaaaagttaataatagtgccacatttttatttattgtgtatcttttttttttcaatcacaca 29188635  T
Q  320 ctattattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattct 379  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  29188634 ctattattgtttttaatgattacaaaacctaaattggaaacataatcatatcataattct 29188575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 361
Target Start/End: Original strand, 3688416 - 3688555
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 321  Q
    |||||||||||||||||||    || || |||||| || |||||||||| ||| || ||| |||||||||||||||||||        ||||||||||||    
T  3688416 tcgttgacaccaaatcttatccatttattttatttgatcaaaggttaattatagtgacacgtttttatttattgtgtatcctttctttcaatcacacact 3688515  T
Q  322 attattgtttttaatgattacaaaacctcaattggaaaca 361  Q
    |||||||||||||||||||||||||||  || ||||||||    
T  3688516 attattgtttttaatgattacaaaacccaaactggaaaca 3688555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 19067669 - 19067749
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatca 302  Q
    ||||||||||||||||| ||  |||||| ||||||||| |||||  |||||||||||||||||| |||||||| |||||||    
T  19067669 tcgttgacaccaaatctcaaccgttgattttatttaatcaaaggccaataataatgccacatttctatttattatgtatca 19067749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 267 - 362
Target Start/End: Complemental strand, 21156956 - 21156861
Alignment:
Q  267 taataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaacctcaattggaaacat 362  Q
    |||| ||| |||||||||||||||||  |||||||        ||||||||||| ||||||||||| |||||||||||||||  ||||| ||||||    
T  21156956 taattatagtgccacatttttatttacggtgtatcctttctttcaatcacacaccattattgttttcaatgattacaaaacccaaattgaaaacat 21156861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 43940188 - 43940257
Alignment:
Q  16 tttttccatagtgaagcaaaacaattttctctttcgaggattatataaggaatggattggtttcttaagc 85  Q
    |||| |||||| ||||||||||| |||||||||||||| || ||  |||| |||||||| ||| ||||||    
T  43940188 ttttgccatagagaagcaaaacagttttctctttcgagaatgatgaaaggtatggattgttttgttaagc 43940257  T

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Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 224 - 379
Target Start/End: Original strand, 19311035 - 19311191
Alignment:
Q  224 gttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnn-caatcacacacta 322  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||         |||||||||||||    
T  19311035 gttgacaccaaatctcaactgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatccttttttttcaatcacacacta 19311134  T
Q  323 ttattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattct 379  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19311135 ttattgtttttaatgattacaaaacctaaattggaaacataatcctatcataattct 19311191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 19654002 - 19654081
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatc 301  Q
    ||||||||||||||||||||  ||| || ||||||||| ||||| |||| ||||| ||||||||||||||||||||||||    
T  19654002 tcgttgacaccaaatcttaaccgtttattttatttaatcaaaggctaattataataccacatttttatttattgtgtatc 19654081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 223 - 379
Target Start/End: Original strand, 24008402 - 24008561
Alignment:
Q  223 cgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnn---caatcacaca 319  Q
    |||||||||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||           ||||||||||    
T  24008402 cgttgacaccaaatctcaactgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatctttttttttttcaatcacaca 24008501  T
Q  320 ctattattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattct 379  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24008502 ctattattgtttttaatgattacaaaacctaaattggaaacataatcctatcataattct 24008561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 374
Target Start/End: Original strand, 5046017 - 5046169
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 321  Q
    ||||||||||||||||| ||  ||| || ||||||||| ||||| ||||  || ||||| |||| | |||||||||||||          ||||||||||    
T  5046017 tcgttgacaccaaatctcaaccgtttattttatttaatcaaaggctaattttagtgccatatttctctttattgtgtatcctttcttgtgatcacacact 5046116  T
Q  322 attattgtttttaatgattacaaaacctcaattggaaacataatcctatcata 374  Q
    |||||||| ||||||||||| |||||   |||||||||||| ||| |||||||    
T  5046117 attattgtatttaatgattataaaactcaaattggaaacatgatcttatcata 5046169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 225 - 379
Target Start/End: Complemental strand, 25929445 - 25929291
Alignment:
Q  225 ttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactatt 324  Q
    |||||||||||||| || ||||| | ||||||||| |||||||||||||||| |||| |||||||||||||||||||        |||||||||||||||    
T  25929445 ttgacaccaaatctcaactgttgtttttatttaatcaaaggttaataataatcccacgtttttatttattgtgtatcttttttttcaatcacacactatt 25929346  T
Q  325 attgtttttaatgattacaaaacctcaattggaaacataatcctatcataattct 379  Q
    ||||||||||||||||||||||||  ||||| |||||| ||| ||||||||||||    
T  25929345 attgtttttaatgattacaaaacccaaattgaaaacatgatcatatcataattct 25929291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 222 - 361
Target Start/End: Complemental strand, 17725673 - 17725534
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 321  Q
    |||||||||||||||| ||    || || |||||| || |||||||||| ||| || ||| |||||||||||||||||||        ||||||||||||    
T  17725673 tcgttgacaccaaatcctatccatttattttatttgatcaaaggttaattatagtgacacgtttttatttattgtgtatcctttctttcaatcacacact 17725574  T
Q  322 attattgtttttaatgattacaaaacctcaattggaaaca 361  Q
    |||||||||||||||||||||||||||  || ||||||||    
T  17725573 attattgtttttaatgattacaaaacccaaactggaaaca 17725534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 224 - 379
Target Start/End: Original strand, 42007545 - 42007698
Alignment:
Q  224 gttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactat 323  Q
    ||||||||||||||| ||  ||| || ||||||||| || |||||||| || || ||| ||| ||||||||||||||||       |||||||||| |||    
T  42007545 gttgacaccaaatctcaaccgttaattttatttaatcaatggttaatagtagtgtcacgtttgtatttattgtgtatcatttttt-caatcacacattat 42007643  T
Q  324 tattgtttttaatgattacaaaacctcaattggaaacataatcctatcataattct 379  Q
    ||||| |||||||||||||||||| | |||||||||| | ||| ||||||||||||    
T  42007644 tattgattttaatgattacaaaacttaaattggaaac-ttatcgtatcataattct 42007698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 373
Target Start/End: Complemental strand, 28930874 - 28930724
Alignment:
Q  223 cgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacacta 322  Q
    |||||||||||||||| |   |||||| | |||| || || |||||| |||| |||||||||||||||||||||||| |        |||||||||||||    
T  28930874 cgttgacaccaaatctcatccgttgat-taatttgatcaagggttaaaaatagtgccacatttttatttattgtgtacccttcttttcaatcacacacta 28930776  T
Q  323 ttattgtttttaatg-attacaaaacctcaattggaaacataatcctatcat 373  Q
    ||||||||||||||| ||||||||||   |||||||||||| ||| ||||||    
T  28930775 ttattgtttttaatgaattacaaaactgaaattggaaacatgatcatatcat 28930724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 379
Target Start/End: Complemental strand, 26395356 - 26395254
Alignment:
Q  276 tgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaacctcaattggaaacataatcctatcataa 375  Q
    ||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||   |||  ||||| |||||| ||||||||||||    
T  26395356 tgccacatttttatttattgtgtatctttttttt-aatcacacactattattgtttttaatgattaccgtacccaaattgaaaacatgatcctatcataa 26395258  T
Q  376 ttct 379  Q
    ||||    
T  26395257 ttct 26395254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 3418437 - 3418357
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatca 302  Q
    ||||||||||||||  | ||  |||||| ||||||||| |||||  |||||||||||||||||| |||||||| |||||||    
T  3418437 tcgttgacaccaaacttcaaccgttgattttatttaatcaaaggccaataataatgccacatttctatttattatgtatca 3418357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 26395535 - 26395493
Alignment:
Q  245 ttgatcttatttaatgaaaggttaataataatgccacattttt 287  Q
    ||||| ||||||||| |||||||||||||| ||||||||||||    
T  26395535 ttgattttatttaatcaaaggttaataatagtgccacattttt 26395493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 268 - 379
Target Start/End: Complemental strand, 33629419 - 33629308
Alignment:
Q  268 aataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaacctcaattggaaacataatcc 367  Q
    ||||||| || |||||||||||||||||||||||        |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  33629419 aataatagtgtcacatttttatttattgtgtatccttttattcaatcacacactattattatttttaatgattacaaaacctaaattggaaacataatcc 33629320  T
Q  368 tatcataattct 379  Q
    ||||||||||||    
T  33629319 tatcataattct 33629308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 23343812 - 23343891
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatc 301  Q
    ||||||||| ||||||| || ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  23343812 tcgttgacatcaaatctcaactgttgatcttatttaatcaaaggttaataatagtgccacatttttatttattgtgtatc 23343891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 379
Target Start/End: Original strand, 23343973 - 23344014
Alignment:
Q  338 attacaaaacctcaattggaaacataatcctatcataattct 379  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  23343973 attacaaaacctaaattggaaacataatcctatcataattct 23344014  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 36237753 - 36237817
Alignment:
Q  310 caatcacacactattattgtttttaatga-ttacaaaacctcaattggaaacataatcctatcat 373  Q
    ||||||||||||||||||||||| ||||| ||||||||||  |||||||||||| ||| ||||||    
T  36237753 caatcacacactattattgttttcaatgatttacaaaaccgaaattggaaacatgatcatatcat 36237817  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 251 - 368
Target Start/End: Complemental strand, 4134785 - 4134668
Alignment:
Q  251 ttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaacctc 350  Q
    ||||| ||| |||||||||| ||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||      
T  4134785 ttattaaatcaaaggttaattatagtgccacatttttatttattgtgtatcatttctttcaatcacacactattattgtttttaatgattacaaaaccca 4134686  T
Q  351 aattggaaacataatcct 368  Q
    |||| ||||||| |||||    
T  4134685 aattagaaacattatcct 4134668  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 347
Target Start/End: Original strand, 4433121 - 4433246
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 321  Q
    ||||||||||||||||| |   |||||| | |||| || |||||||||  ||| |||||||||||||||||||||| |||        ||||||||||||    
T  4433121 tcgttgacaccaaatctcatccgttgatttaatttgatcaaaggttaaatatagtgccacatttttatttattgtgcatcctttctttcaatcacacact 4433220  T
Q  322 attattgtttttaatgattacaaaac 347  Q
    ||||||||||| ||||||||||||||    
T  4433221 attattgttttaaatgattacaaaac 4433246  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 302
Target Start/End: Complemental strand, 34309250 - 34309170
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatca 302  Q
    ||||||||||||||||| ||  |||||| ||||||||| |||||  |||||||||||||||||| |||||||| |||||||    
T  34309250 tcgttgacaccaaatctcaaccgttgattttatttaatcaaaggccaataataatgccacatttctatttattatgtatca 34309170  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 23026615 - 23026694
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatc 301  Q
    ||||||||| ||||||| || | || || ||||||||| |||| ||||| ||| |||||| ||| |||||||||||||||    
T  23026615 tcgttgacatcaaatctcaactatttattttatttaatcaaagattaattatagtgccacgtttatatttattgtgtatc 23026694  T

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Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 22212959 - 22212873
Alignment:
Q  261 aaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacactattattgtttttaatgattacaaaac 347  Q
    |||||||||| |||||||||||||||||||||||||||||||       |||| |||||| ||||||||||||||||||||||||||    
T  22212959 aaaggttaattataatgccacatttttatttattgtgtatcatttctttcaattacacacgattattgtttttaatgattacaaaac 22212873  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 347
Target Start/End: Original strand, 13476234 - 13476359
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 321  Q
    ||||||||||||||||| |   |||||| | |||| || |||||||||  ||| ||||||||||||||||||||||||||        ||| ||||||||    
T  13476234 tcgttgacaccaaatctcatccgttgatttaatttgatcaaaggttaaatatagtgccacatttttatttattgtgtatcctttctttcaaccacacact 13476333  T
Q  322 attattgtttttaatgattacaaaac 347  Q
    ||||||||||| ||||||||||||||    
T  13476334 attattgttttaaatgattacaaaac 13476359  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 373
Target Start/End: Complemental strand, 45081423 - 45081271
Alignment:
Q  222 tcgttgacaccaaatcttaattgttgatcttatttaatgaaaggttaataataatgccacatttttatttattgtgtatcannnnnnncaatcacacact 321  Q
    ||||||||||||||||| ||   || || |||||| || ||||| |||  |||  ||||||||||| ||||||||||| |        |||||||||| |    
T  45081423 tcgttgacaccaaatctcaaccatttattttatttgatcaaaggctaaatatagagccacatttttttttattgtgtacccttcttttcaatcacacatt 45081324  T
Q  322 attattgtttttaatga-ttacaaaacctcaattggaaacataatcctatcat 373  Q
    ||||||||||| ||||| ||||||||||  |||||||||||| ||| ||||||    
T  45081323 attattgttttcaatgatttacaaaaccgaaattggaaacatgatcatatcat 45081271  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 46150662 - 46150599
Alignment:
Q  310 caatcacacactattattgtttttaatga-ttacaaaacctcaattggaaacataatcctatcat 373  Q
    ||||||||||||||||||| ||| ||||| ||||||||||  |||||||||||| ||| ||||||    
T  46150662 caatcacacactattattg-tttcaatgatttacaaaaccgaaattggaaacatgatcatatcat 46150599  T

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