View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4893_low_3 (Length: 362)

Name: NF4893_low_3
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4893_low_3
NF4893_low_3
[»] chr3 (2 HSPs)
chr3 (84-344)||(13401095-13401357)
chr3 (136-167)||(23164808-23164839)
[»] chr1 (2 HSPs)
chr1 (84-164)||(25930418-25930498)
chr1 (127-174)||(52055338-52055385)
[»] chr5 (1 HSPs)
chr5 (84-174)||(26311811-26311901)
[»] chr7 (2 HSPs)
chr7 (84-175)||(11672388-11672479)
chr7 (127-177)||(4099738-4099788)
[»] chr4 (3 HSPs)
chr4 (84-131)||(29221792-29221839)
chr4 (127-174)||(32131018-32131065)
chr4 (139-175)||(29221864-29221900)
[»] chr8 (1 HSPs)
chr8 (136-174)||(3471382-3471420)
[»] chr2 (1 HSPs)
chr2 (137-171)||(2063600-2063634)
[»] chr6 (1 HSPs)
chr6 (141-177)||(29308693-29308729)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 84 - 344
Target Start/End: Complemental strand, 13401357 - 13401095
Alignment:
Q  84 tttatttaagtagagggtgggtattaaaattaaatttttgtttgaggctcagcctggttgaacaccttgcactcccccaaggccgggcctgattgtggct 183  Q
    |||||||||||  ||||||||||||||| ||||||||||||| |||| || | ||||||||||||||||||||| ||||| || |||| |||||||||||    
T  13401357 tttatttaagtgtagggtgggtattaaacttaaatttttgttcgaggttcggactggttgaacaccttgcactctcccaaagcggggcttgattgtggct 13401258  T
Q  184 cccccgctagtggatagtggaattggacatctggattagtgcgtctttgggccggatactgagttcc--cnnnnnnnnnnnnggacatttaagttatatg 281  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||||| | ||| ||||||  |            ||||||||||||||||||    
T  13401257 cccccgctagtggatagtggaattgggcatctggattagtgggtctttgggccgtacactaagttcccacaaaaaaaaaaaaggacatttaagttatatg 13401158  T
Q  282 gtttagaactttgaccaaatacattcagatgccaaggaaaaccagtgctgatgttttgtttat 344  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13401157 gtttaaaactttgaccaaatacattcagatgccaaggaaaaccagtgctgatgttttgtttat 13401095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 167
Target Start/End: Original strand, 23164808 - 23164839
Alignment:
Q  136 cctggttgaacaccttgcactcccccaaggcc 167  Q
    ||||||||||||||||||||||||||||||||    
T  23164808 cctggttgaacaccttgcactcccccaaggcc 23164839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 25930498 - 25930418
Alignment:
Q  84 tttatttaagtagagggtgggtattaaaattaaatttttgtttgaggctcagcctggttgaacaccttgcactcccccaag 164  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||| | |||||||||| || ||||||||||||||||    
T  25930498 tttatttaagtggagggtgggtattaaacttaaatttttgtttgaggcccggcctggttgagcaacttgcactcccccaag 25930418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 52055385 - 52055338
Alignment:
Q  127 gaggctcagcctggttgaacaccttgcactcccccaaggccgggcctg 174  Q
    ||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  52055385 gaggctcggcctggttgagcaccttgcactcccccaaggtcgggcctg 52055338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 26311901 - 26311811
Alignment:
Q  84 tttatttaagtagagggtgggtattaaaattaaatttttgtttgaggctcagcctggttgaacaccttgcactcccccaaggccgggcctg 174  Q
    ||||||||||| | |||| ||||||| | |||| |||| ||| ||||| | ||||| ||||||||||||||| ||| |||| |||||||||    
T  26311901 tttatttaagttgggggtaggtattagatttaatttttcgttagaggcccggcctgattgaacaccttgcacaccctcaagaccgggcctg 26311811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 11672479 - 11672388
Alignment:
Q  84 tttatttaagtagagggtgggtattaaaattaaatttttgtttgaggctcagcctggttgaacaccttgcactcccccaaggccgggcctga 175  Q
    ||||||||||| | |||||| ||||| | |||| |||| |||  |||| |  ||||||||| |||||||||| ||| |||||||||||||||    
T  11672479 tttatttaagtggggggtggatattagatttaatttttcgttaaaggcccgacctggttgagcaccttgcacaccctcaaggccgggcctga 11672388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 4099788 - 4099738
Alignment:
Q  127 gaggctcagcctggttgaacaccttgcactcccccaaggccgggcctgatt 177  Q
    ||||| ||| |||||||| |||||||||| ||| |||||||||||||||||    
T  4099788 gaggcccagtctggttgagcaccttgcacaccctcaaggccgggcctgatt 4099738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 29221792 - 29221839
Alignment:
Q  84 tttatttaagtagagggtgggtattaaaattaaatttttgtttgaggc 131  Q
    ||||||||||| | |||||||||||||| |||| ||||||||||||||    
T  29221792 tttatttaagtggggggtgggtattaaacttaattttttgtttgaggc 29221839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 32131018 - 32131065
Alignment:
Q  127 gaggctcagcctggttgaacaccttgcactcccccaaggccgggcctg 174  Q
    ||||| ||||||||||||||||||| ||| ||| ||||||||||||||    
T  32131018 gaggcccagcctggttgaacaccttacacaccctcaaggccgggcctg 32131065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 29221864 - 29221900
Alignment:
Q  139 ggttgaacaccttgcactcccccaaggccgggcctga 175  Q
    |||||| |||||||||||||| |||||||||||||||    
T  29221864 ggttgagcaccttgcactcccacaaggccgggcctga 29221900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 3471420 - 3471382
Alignment:
Q  136 cctggttgaacaccttgcactcccccaaggccgggcctg 174  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  3471420 cctggttgagcatcttgcactcccccaaggccgggcctg 3471382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 2063634 - 2063600
Alignment:
Q  137 ctggttgaacaccttgcactcccccaaggccgggc 171  Q
    |||||||||||||||||||||||||| ||||||||    
T  2063634 ctggttgaacaccttgcactcccccagggccgggc 2063600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 29308693 - 29308729
Alignment:
Q  141 ttgaacaccttgcactcccccaaggccgggcctgatt 177  Q
    |||| |||||||||||||| |||||||||||||||||    
T  29308693 ttgagcaccttgcactccctcaaggccgggcctgatt 29308729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University