View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4893_low_5 (Length: 328)
Name: NF4893_low_5
Description: NF4893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4893_low_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 225460 - 225150
Alignment:
| Q |
18 |
aatttctgcaattatgtaatgaatttatggacaaaactttagnnnnnnnnnnnnntgatcaattattataaagtagctagaaattttaattatatgatgg |
117 |
Q |
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| T |
225460 |
aatttctgcaattatgtaatgaatttatggacaaaactttagtatatatatatattgatcaattattataaagtagctagaaattttaattatatgatgg |
225361 |
T |
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| Q |
118 |
aaattaattaaggtagctatatatataggccaattacccttgcatccttggtcgcatagattatgtacaagatgatgtaaatgagctctacgacgcaccc |
217 |
Q |
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| T |
225360 |
aaattaattaaggtagctgtatatataggccaattacccttgcatccttggtcgcatagattatgtacaagatgatgtaaatgagctctacgacgcaccc |
225261 |
T |
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| Q |
218 |
aaaagagttaatggtaataaggagaaattcatcttttttgaggaatgcataatacaaccacagcatggaactgaatagtgccactagataaggtagtgac |
317 |
Q |
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| T |
225260 |
aaaagagttaatggtaataaggagaaattcatcttttttgaggaatgcataatacaaccacagcatggaactgaatagtgccactagataaggtagtgac |
225161 |
T |
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| Q |
318 |
tgaaaaccctc |
328 |
Q |
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| T |
225160 |
tgaaaaccctc |
225150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 152 - 328
Target Start/End: Complemental strand, 239343 - 239167
Alignment:
| Q |
152 |
tacccttgcatcc-ttggtcgcatagattatgtacaagatgatgtaaatgagctctacgacgcacccaaaagagttaatggtaataaggagaaattcatc |
250 |
Q |
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||||||||||||| ||||| |||||||| |||||||| |||||||| ||| |||||| || || ||||| ||||| |||||||| |||||||| |||| |
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| T |
239343 |
tacccttgcatcccttggt-gcatagatgatgtacaatatgatgtagatggtctctaccacacatccaaatgagtttatggtaatgaggagaaaagcatc |
239245 |
T |
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| Q |
251 |
ttttttgaggaatgcataatacaaccacagcatggaactgaatagtgccactagataaggtagtgactgaaaaccctc |
328 |
Q |
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||||||||| |||||||| |||||||| |||||||| ||||| | || ||||| ||||||||||||||||||||||| |
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| T |
239244 |
ttttttgagcaatgcatagtacaaccaaagcatggagctgaacaaagctactaggtaaggtagtgactgaaaaccctc |
239167 |
T |
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