View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4894-Insertion-2 (Length: 752)
Name: NF4894-Insertion-2
Description: NF4894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4894-Insertion-2 |
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| [»] chr1 (7 HSPs) |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 662; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 8 - 752
Target Start/End: Complemental strand, 51851796 - 51851056
Alignment:
| Q |
8 |
tttagtacctgaatttcagactgcaaacaaccatgtagtgctacaacagtgtaactaaaatggcgaagagcagctcccacttttgcatattgctgccatg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
51851796 |
tttagtacctgaatttcagactgcaaacaaccatgtagtgctacaacggtgtaactaaaatggcgaagagcagctcctacttttgcatattgctgccatg |
51851697 |
T |
|
| Q |
108 |
ggatcttgtggcagcatcttgagtatcttggctcccaatttgcttgtatagcctgtttatttcgaagctataagatcttctatcacaaagtaccaatttc |
207 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
51851696 |
ggatcctgtggcagcatcttgagtatcttggctcccaatttgcttgtatagcctgtttatttcgaaacta---gatcttctatcacaaagtaccaatttc |
51851600 |
T |
|
| Q |
208 |
tgatatacnnnnnnnnatnnnnnnntagaaggggaatttcttatatactttacttgacaaaaaagggacactagcttaccagtgtttcatccttagattt |
307 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51851599 |
tgatatactttcttttataaaaaaatagaaggggaatttcttatatactttacttgacaaaaaagggacactagcttaccagtgtttcatccttagattt |
51851500 |
T |
|
| Q |
308 |
agagtctaaaacggcctcgtagcacttgtaaatgagatcctcagatgaatcatcatttgcttgtttttcagaatcataaaaatattccatgacagaaact |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51851499 |
agagtctaaaacggcctcgtagcacttgtaaatgagatcctcagatgaatcatcatttgcttgtttttcagaatcataaaaatattccatgacagaaact |
51851400 |
T |
|
| Q |
408 |
gcatcattgttttcatattcaattataaagatggaggaaattgaaatgctcttgagcagatattaattgtcataaacttaagcaattttctttaaagaag |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51851399 |
gcatcattgttttcatattcaattataaagatggaggaaattgaaatgctcttgagcagatattaattgtcataaacttaagcaattttctttaaagaag |
51851300 |
T |
|
| Q |
508 |
tcatgatctgcattgtttctcaaagttcaccttaccttctatggatttggctaatccttcaagctttgatatggtggatttatggagttcttcccctgac |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51851299 |
tcatgatctgcattgtttctcaaagttcaccttaccttctatggatttggctaatccttcaagctttgatatggtggatttatggagttcttcccctgac |
51851200 |
T |
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| Q |
608 |
cagtttggaaatacaaataggctcatcacaagacaaagaccaacgcctatgcatatggtatagatgcgatctttcccaatgctccagacattatcaacgc |
707 |
Q |
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| T |
51851199 |
cagtttggaaatacaaataggctcatcacaagacaaagaccaacgcctatgcatatggtatagatgcgatctttcccaatgctccagacattatcaacgc |
51851100 |
T |
|
| Q |
708 |
ggtaacttgatacaattatcaaattaaagggtcaacagaaatatc |
752 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51851099 |
ggtaacttgatacaattatcaaattaaa-ggtcaacagaaatatc |
51851056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 7 - 439
Target Start/End: Complemental strand, 51822038 - 51821608
Alignment:
| Q |
7 |
atttagtacctgaatttcagactgcaaacaaccatgtagtgctacaacagtgtaactaaaatggcgaagagcagctcccacttttgcatattgctgccat |
106 |
Q |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
51822038 |
atttagtacctgaatttctgactgcaaacatccatgtagtgctacaacagtgtaactaaaatggcgaagagaagctcctacttttgcatattgctgccat |
51821939 |
T |
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| Q |
107 |
gggatcttgtggcagcatcttgagtatcttggctcccaatttgcttgtatagcctgtttatttcgaagctataagatcttctatcacaaagtaccaattt |
206 |
Q |
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||||| | ||||||||| |||||||||||||||||||| ||||||| | ||||||||| ||| | || ||||||||||| | ||||| || |||| |
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| T |
51821938 |
gggattctctggcagcattttgagtatcttggctcccaacttgcttgcaatgcctgtttaattcaacactgtaagatcttctgttacaaa-aacaaattc |
51821840 |
T |
|
| Q |
207 |
ctgatatacnnnnnnnnatnnnnnnntagaaggggaatttcttatatactttacttgacaaaaaagggacactagcttaccagtgtttcatccttagatt |
306 |
Q |
| |
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||||||||| || || ||||| |||| || |||||||||||||||||||||||| ||| |||||||||||||||||| ||| || |
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| T |
51821839 |
ctgatatac-tttttttat-aaaaaata-aagggaaattcctagtatactttacttgacaaaaaaggg-cacagacttaccagtgtttcatccctagctt |
51821744 |
T |
|
| Q |
307 |
tagagtctaaaacggcctcgtagcacttgtaaatgagatcctcagatgaatca---tcatttgcttgtttttcagaatcataaaaatattccatgacaga |
403 |
Q |
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|||| |||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||| ||||||| |||||||||||| |||| |
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| T |
51821743 |
tagaatctaaaacggcctcatagcacttgtaaatgggatcctctgatgaatcatcttcatttgcttgttttttagaatcagaaaaatattccacaacagt |
51821644 |
T |
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| Q |
404 |
aactgcatcattgttttcatattcaattataaagat |
439 |
Q |
| |
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| |||||||||| |||||| ||||||||| |||| |
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| T |
51821643 |
agctgcatcattattttcaccatcaattatatagat |
51821608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 539 - 752
Target Start/End: Complemental strand, 51861420 - 51861208
Alignment:
| Q |
539 |
ttaccttctatggatttggctaatccttcaagctttgatatggtggatttatggagttcttcccctgaccagtttggaaatacaaataggctcatcacaa |
638 |
Q |
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||||||||||| || |||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
51861420 |
ttaccttctatagagttggctaagccttcaagctttgatatggtggatttatgaaggtcttcacctgaccagtttggaaatacaaatagggtcatcacaa |
51861321 |
T |
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| Q |
639 |
gacaaagaccaacgcctatgcatatggtatagatgcgatctttcccaatgctccagacattatcaacgcggtaacttgatacaattatcaaattaaaggg |
738 |
Q |
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|||||| | ||||||| |||||||||||| ||| ||||||||| | | |||| ||| |||||| |||||||||||||||||||| ||||||||||| || |
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| T |
51861320 |
gacaaatagcaacgccgatgcatatggtagagacgcgatcttttgccaagctcaagatattatctacgcggtaacttgatacaatcatcaaattaaa-gg |
51861222 |
T |
|
| Q |
739 |
tcaacagaaatatc |
752 |
Q |
| |
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|||| ||||||||| |
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| T |
51861221 |
tcaagagaaatatc |
51861208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 539 - 750
Target Start/End: Complemental strand, 51821461 - 51821251
Alignment:
| Q |
539 |
ttaccttctatggatttggctaatccttcaagctttgatatggtggatttatggagttcttcccctgaccagtttggaaatacaaataggctcatcacaa |
638 |
Q |
| |
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|||||||||| || |||||||| |||||||| |||||||||||||||||||| || |||||||||||||| || |||||||||||||| ||||| |||| |
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| T |
51821461 |
ttaccttctacagagttggctaagccttcaagttttgatatggtggatttatgaaggtcttcccctgaccaattcggaaatacaaatagactcataacaa |
51821362 |
T |
|
| Q |
639 |
gacaaagaccaacgcctatgcatatggtatagatgcgatctttcccaatgctccagacattatcaacgcggtaacttgatacaattatcaaattaaaggg |
738 |
Q |
| |
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|||||||||||||||| |||||||| || ||||||||||||| | || || ||||||||||||| |||||||| |||||||||||||||||||| || |
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| T |
51821361 |
gacaaagaccaacgccgatgcatatagttgagatgcgatcttttgccatcttcaagacattatcaacacggtaactcgatacaattatcaaattaaa-gg |
51821263 |
T |
|
| Q |
739 |
tcaacagaaata |
750 |
Q |
| |
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|||| ||||||| |
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| T |
51821262 |
tcaagagaaata |
51821251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 51861897 - 51861740
Alignment:
| Q |
7 |
atttagtacctgaatttcagactgcaaacaaccatgtagtgctacaacagtgtaactaaaatggcgaagagcagctcccacttttgcatattgctgccat |
106 |
Q |
| |
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|||||||||||||||||||||||| | ||| ||||||||||| |||||||||||||||||||| ||||||| || ||| |||||||||||||| |||||| |
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| T |
51861897 |
atttagtacctgaatttcagactgaagacatccatgtagtgcgacaacagtgtaactaaaatgacgaagagaagttccgacttttgcatattgttgccat |
51861798 |
T |
|
| Q |
107 |
gggatcttgtggcagcatcttgagtatcttggctcccaatttgcttgtatagcctgtt |
164 |
Q |
| |
|
|||||| | ||||||| |||||||||||||||||||||||| ||||| || ||||||| |
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|
| T |
51861797 |
gggatcctatggcagcttcttgagtatcttggctcccaattagcttgcattgcctgtt |
51861740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 277 - 422
Target Start/End: Complemental strand, 51861666 - 51861518
Alignment:
| Q |
277 |
actagcttaccagtgtttcatccttagatttagagtctaaaacggcctcgtagcacttgtaaatgagatcctcagatgaatca---tcatttgcttgttt |
373 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||||||||||| || ||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
51861666 |
actagcttacaagtgtttcatccttagctttagagtctaaaacagcttcgtagcacttgtaaataggatcctcggatgaatcatcttcatttgcttgttt |
51861567 |
T |
|
| Q |
374 |
ttcagaatcataaaaatattccatgacagaaactgcatcattgttttca |
422 |
Q |
| |
|
|||||||||||||||||| |||| |||| |||||||||||| |||||| |
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| T |
51861566 |
ttcagaatcataaaaatagtccacaacagtaactgcatcattattttca |
51861518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 537 - 724
Target Start/End: Original strand, 49808551 - 49808734
Alignment:
| Q |
537 |
ccttaccttctatggatttggctaatccttcaagctttgatatggtggatttatggagttcttcccctgaccagtttggaaatacaaataggctcatcac |
636 |
Q |
| |
|
||||| || |||| ||||||||||| || ||||||||||||||||| |||| |||||||||||||||| |||||||||||| ||||||| |||||| | |
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| T |
49808551 |
ccttaactgctatagatttggctaagccatcaagctttgatatggtagatt-atggagttcttccccttcccagtttggaaaaacaaataagctcattgc |
49808649 |
T |
|
| Q |
637 |
-aagacaaagaccaacgcctatgcatatggtatagatgcgatctttcccaatgctccagacattatcaacgcggtaacttgatacaatt |
724 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| |||||||||| |
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| T |
49808650 |
caagacaaagaca----cctatgcatatggtatagatgcgatctctcccgatgctcaagacattatcaacgcggtaaaatgatacaatt |
49808734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 752
Target Start/End: Complemental strand, 5230 - 5167
Alignment:
| Q |
688 |
gctccagacattatcaacgcggtaacttgatacaattatcaaattaaagggtcaacagaaatatc |
752 |
Q |
| |
|
|||| ||| |||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||| |
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|
| T |
5230 |
gctcaagatattatctacgcggtaacttgatacaatcatcaaattaaa-ggtcaagagaaatatc |
5167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 4780843 - 4780938
Alignment:
| Q |
13 |
tacctgaatttcagactgcaaacaaccatgtagtgctacaacagtgtaactaaaatggcgaagagcagctcccacttttgcatattgctgccatgg |
108 |
Q |
| |
|
|||||||||||| || |||||| ||||| || ||||| || ||||| | ||| || |||||| ||||||| |||||| |||||||||||||||| |
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|
| T |
4780843 |
tacctgaatttcggatctcaaacagccatgcagagctaccacggtgtagccaaattgacgaagaacagctccaacttttacatattgctgccatgg |
4780938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 590
Target Start/End: Original strand, 42454241 - 42454276
Alignment:
| Q |
555 |
tggctaatccttcaagctttgatatggtggatttat |
590 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
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| T |
42454241 |
tggctaagccttcaagctttgatatggtggatttat |
42454276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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