View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4894-Insertion-4 (Length: 643)
Name: NF4894-Insertion-4
Description: NF4894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4894-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 316 - 625
Target Start/End: Complemental strand, 6018935 - 6018627
Alignment:
| Q |
316 |
tggtaccagattggacatttgagttctcttcccattttttcaagatcccccatttctgatttcgattaattgaatcacaatcacaatgaatagtgaaaga |
415 |
Q |
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| T |
6018935 |
tggtaccagattggacatttgagttctcttcccattttttcaagatcccccatttctgatttcgattaattgaatcacaatcacaatgaatagtgaaaga |
6018836 |
T |
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| Q |
416 |
acagagaagaaagggttttaatgaagttttggattggatttgaatttgaaaaccgcgctttagctatctcacgcgccaataaattcgcctttggcggttc |
515 |
Q |
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| T |
6018835 |
acagagaagaaagggttttaatgaagttttggattggatttgaatttgaaaaccgcgctttagctgtctcacgcgccaataaattcgcctttggcggttc |
6018736 |
T |
|
| Q |
516 |
aaattttgggaggattacacgatacgcttcgtccaaaatactgtaaaactatttatcaattaat-aaaaaatacatttatgttaaattaaattactttta |
614 |
Q |
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| T |
6018735 |
aaattttgggaggattacacgatacgcttcgtccaaaatactgt-aaactatttatcaattaataaaaaaatacatttatgtt-aattaaattactttta |
6018638 |
T |
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| Q |
615 |
agatgtgtaca |
625 |
Q |
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| T |
6018637 |
agatgtgtaca |
6018627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 7 - 95
Target Start/End: Complemental strand, 6019249 - 6019161
Alignment:
| Q |
7 |
aatgataatttgagtacctcgacgagtgaagggaattttacaaacaggacaggaagaagcagatttcatagacttaaatatacaagagc |
95 |
Q |
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| T |
6019249 |
aatgataatttcagtacctcgacgagtgaagggaattttacaaacaggacaagaagaagcagatttcatagacttaaatatacaagagc |
6019161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 172 - 251
Target Start/End: Complemental strand, 6019084 - 6019005
Alignment:
| Q |
172 |
ataacttacttgcagaaaagatgattgcaggtgagtgaaactgcggaatgtagtaaacccagactacaagatgaaccaag |
251 |
Q |
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| T |
6019084 |
ataacttacttgcagaaaagatgattgcaggtgagtgaaactgcggaatgaagtaaacccagactacaagatgaaccaag |
6019005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 20944762 - 20944708
Alignment:
| Q |
316 |
tggtaccagattggacatttgagttctcttcccattttttcaagatcccccattt |
370 |
Q |
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| T |
20944762 |
tggtaccagattggacatttgagttctctgcccatgttttcaagatccaccattt |
20944708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 38009650 - 38009702
Alignment:
| Q |
177 |
ttacttgcagaaaagatgattgcaggtgagtgaaactgcggaatgtagtaaac |
229 |
Q |
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| T |
38009650 |
ttacttgcagaaaagttgattccgggtgagtgaaactgcagaatgtagcaaac |
38009702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 38009798 - 38009830
Alignment:
| Q |
319 |
taccagattggacatttgagttctcttcccatt |
351 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
38009798 |
taccagattggacatttgagttctctgcccatt |
38009830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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