View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4894-Insertion-5 (Length: 625)
Name: NF4894-Insertion-5
Description: NF4894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4894-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 527
Target Start/End: Original strand, 2486506 - 2487016
Alignment:
| Q |
7 |
agaatagggcacggataacactaattcctaacattgtccgttttgtgtttgaaactaatctatctgcattgtggattacttccttgttttgtttaacaat |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486506 |
agaatagggcacggataacactaattcctaacattgcccgttttgtgtttgaaactaatctatctgcattgtggattacttccttgttttgtttaacaat |
2486605 |
T |
|
| Q |
107 |
cacttcaattatgctcaaccaaccgatcaagacgaagacagcagcgttccacgaaacaaaagtcacttctatcaccgatgttgcacttgctagcagcagt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486606 |
cacttcaattatgctcaaccaaccgatcaagacgaagacagcagcgttccacgaaacaaaagtcacttctatcaccgatgttgcacttgctagcagcagt |
2486705 |
T |
|
| Q |
207 |
atatataagactggatatacgcttctgttaaccgggtggtctgttacaaccgtaagtagggcaagttgaaacataaaagcataaccaacgagaaggacga |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2486706 |
atatataagactggatatacgcttctgttaaccgggtggtctgttacaactgcaagtagggcaagttgaaacataaaagcataaccaatgagaaggactg |
2486805 |
T |
|
| Q |
307 |
agatgattgtgccatgtattgccattgcttcagcagcatcgatcgatgatatctttagtgccataaagagaaaatgtagcgagcataaacatatcgaata |
406 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |
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| T |
2486806 |
agatgattgtgttatgtattgccattgcttcagcagcatcgattgatgatatctttagtgccatgaagagaaaatgtagcaagcataaacatattgaata |
2486905 |
T |
|
| Q |
407 |
cttgactacttcctttaacctttgtttgtccatatctgtgtacctatacatatatacaaatatacaaatgttaatgagattagactacataaatata--- |
503 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |
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| T |
2486906 |
ctttgctacttcctttaacctttgtttgtccatatctgtgtacctatacatattta-------------gttcatgagattagactacataaatatatat |
2486992 |
T |
|
| Q |
504 |
tgttgatttatgagttttatttga |
527 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
2486993 |
tattgatttatgagttttatttga |
2487016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 528 - 603
Target Start/End: Original strand, 2487068 - 2487143
Alignment:
| Q |
528 |
gtacgtgtatctagggttaatatcatcagaggatcctggttcttccatcgcaatctcaatgacgtgatctgccatg |
603 |
Q |
| |
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|||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2487068 |
gtacctgtatatagggttaatttcatcagaggatcctggttcttccatcgcaatctcaatgacgtgatctgccatg |
2487143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 7 - 527
Target Start/End: Original strand, 27089092 - 27089602
Alignment:
| Q |
7 |
agaatagggcacggataacactaattcctaacattgtccgttttgtgtttgaaactaatctatctgcattgtggattacttccttgttttgtttaacaat |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27089092 |
agaatagggcacggataacactaattcctaacattgcccgttttgtgtttgaaactaatctatctgcattgtggattacttccttgttttgtttaacaat |
27089191 |
T |
|
| Q |
107 |
cacttcaattatgctcaaccaaccgatcaagacgaagacagcagcgttccacgaaacaaaagtcacttctatcaccgatgttgcacttgctagcagcagt |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27089192 |
cacttcaattatgctcaaccaaccgatcaagacgaagacagcagcgttccacgaaacaaaagtcacttctatcaccgatgttgcacttgctagcagcagt |
27089291 |
T |
|
| Q |
207 |
atatataagactggatatacgcttctgttaaccgggtggtctgttacaaccgtaagtagggcaagttgaaacataaaagcataaccaacgagaaggacga |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27089292 |
atatataagactggatatacgcttctgttaaccgggtggtctgttacaactgcaagtagggcaagttgaaacataaaagcataaccaatgagaaggactg |
27089391 |
T |
|
| Q |
307 |
agatgattgtgccatgtattgccattgcttcagcagcatcgatcgatgatatctttagtgccataaagagaaaatgtagcgagcataaacatatcgaata |
406 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |
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| T |
27089392 |
agatgattgtgttatgtattgccattgcttcagcagcatcgattgatgatatctttagtgccatgaagagaaaatgtagcaagcataaacatattgaata |
27089491 |
T |
|
| Q |
407 |
cttgactacttcctttaacctttgtttgtccatatctgtgtacctatacatatatacaaatatacaaatgttaatgagattagactacataaatata--- |
503 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |
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| T |
27089492 |
ctttgctacttcctttaacctttgtttgtccatatctgtgtacctatacatattta-------------gttcatgagattagactacataaatatatat |
27089578 |
T |
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| Q |
504 |
tgttgatttatgagttttatttga |
527 |
Q |
| |
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| |||||||||||||||||||||| |
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| T |
27089579 |
tattgatttatgagttttatttga |
27089602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 528 - 603
Target Start/End: Original strand, 27089654 - 27089729
Alignment:
| Q |
528 |
gtacgtgtatctagggttaatatcatcagaggatcctggttcttccatcgcaatctcaatgacgtgatctgccatg |
603 |
Q |
| |
|
|||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27089654 |
gtacctgtatatagggttaatttcatcagaggatcctggttcttccatcgcaatctcaatgacgtgatctgccatg |
27089729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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