View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4894-Insertion-6 (Length: 462)
Name: NF4894-Insertion-6
Description: NF4894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4894-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 8 - 130
Target Start/End: Complemental strand, 48674759 - 48674637
Alignment:
| Q |
8 |
atgatcacatataacattataagttaacacaacatccatcacattttgcaatgtctcggttccccaagacatagaaggccatgaattttccattttttct |
107 |
Q |
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| T |
48674759 |
atgatcacatataacattataagttaacacaacatccatcacattttgcaatgtctcggttccccaagacatagaaggccatgaattttccattttttct |
48674660 |
T |
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| Q |
108 |
acttccataagaacattgttcat |
130 |
Q |
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| T |
48674659 |
acttccataagaacattgttcat |
48674637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 149 - 303
Target Start/End: Complemental strand, 48674039 - 48673885
Alignment:
| Q |
149 |
aatctaatcataacttatataattcttgaaatatcattaatcaattttgcacgattgagtatgactcataatttaagatgatattttatgtgcgtggtga |
248 |
Q |
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| T |
48674039 |
aatctaatcataacttatataaatcttgaaatatcataaatcaattttgcaggattgagtgtgactcataatttaagatgatattttatgtgcgtagtga |
48673940 |
T |
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| Q |
249 |
taatcatagttttaaattgtcatatatccacgtgagtttaactcagttgataagg |
303 |
Q |
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| T |
48673939 |
taatcatagttttaaattgtcatctgttcacgtgagtttaactcagttggtaagg |
48673885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 368 - 462
Target Start/End: Complemental strand, 48673826 - 48673733
Alignment:
| Q |
368 |
ttgtgatctacaatcgtaattgcggactcaatattacgggttttaaaaggctctgcaatgacatcatatctgcaattttaaacgcagttgtcaca |
462 |
Q |
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| T |
48673826 |
ttgtgatctacaatcataattgcggactcaatattacgggttttaaa-ggctctgcaatgacatcatatctgcaattttaaacgcagttgtcaca |
48673733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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