View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4894-Insertion-8 (Length: 403)
Name: NF4894-Insertion-8
Description: NF4894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4894-Insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 6453271 - 6453105
Alignment:
| Q |
8 |
caatttttgtgactgatgaaattgttttattgttttagggacagggtggtcagcagatgaaggccgatgcacaagaggttgctgatgctgcaaagattac |
107 |
Q |
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| T |
6453271 |
caattttggtgactgatgaaattgttttattgttttagggacagggtggtcagcaaatgaaggcagatgcacaagaggttgctgatgctgcaaagattac |
6453172 |
T |
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| Q |
108 |
agttggtgctcacaaatgaatctatgtagcggggagctctcttaagtcttaa-tagctatttgcaac |
173 |
Q |
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| T |
6453171 |
agttggtgctcacaaatgaatctatgtagcggggagctctcttaagtcttaagtagctatttgcaac |
6453105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 259 - 403
Target Start/End: Complemental strand, 6453018 - 6452874
Alignment:
| Q |
259 |
tttcggatggtgttatatgattggttgtataccacctgcttgaaataagagagactacaattttatcccaatatttgtcatgatttatttatttatattt |
358 |
Q |
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| T |
6453018 |
tttcggatggtgttatatgattggttgtataccacctgcttgaaataagagagactacaattttatcccaatatttgtcctgatttatttatttatattt |
6452919 |
T |
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| Q |
359 |
aaatcataagaattttcaaggtaatatacacgcacacacttggag |
403 |
Q |
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| T |
6452918 |
aaatcataagaattttcaaggtaatatacacgcacacacttggag |
6452874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 6463662 - 6463586
Alignment:
| Q |
327 |
caatatttgtcatgatttatttatttatatttaaatcataagaattttcaaggtaatatacacgcacacacttggag |
403 |
Q |
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| T |
6463662 |
caatatttatcatggtttatttatttttatttaaatcataagaattttcaaggtaatatatacgcacacacttggag |
6463586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 6463758 - 6463685
Alignment:
| Q |
259 |
tttcggatggtgttatatgattggttgtataccacctgcttgaaataagagagactacaattttatcccaatattt |
334 |
Q |
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| T |
6463758 |
tttcggatggtgttatatgattggttgtataccacctgcttgaaataa--gagacgacaattttatctcaatattt |
6463685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 154
Target Start/End: Complemental strand, 6463950 - 6463846
Alignment:
| Q |
50 |
agggtggtcagcagatgaaggccgatgcacaagaggttgctgatgctgcaaagattacagttggtgctcacaaatgaatctatgtagcggggagctctct |
149 |
Q |
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| T |
6463950 |
agggtgatcagcaaatgaaggcaaacacacaagaggctgctgatgctgtaaagagtacagatggtgctcacaaatgaatctatgtggtggggagctctct |
6463851 |
T |
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| Q |
150 |
taagt |
154 |
Q |
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| T |
6463850 |
taagt |
6463846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 156
Target Start/End: Complemental strand, 44942330 - 44942228
Alignment:
| Q |
54 |
tggtcagcagatgaaggccgatgcacaagaggttgctgatgctgcaaagattacagttggtgctcacaaatgaatctatgtagcggggagctctcttaag |
153 |
Q |
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| T |
44942330 |
tggtcaacaaatgaaggctaaggcacaagaggctgctgatgctgttaagaatagagttggtgctcaaaaatgaatctatatagtggagagctctcttaag |
44942231 |
T |
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| Q |
154 |
tct |
156 |
Q |
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||| |
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| T |
44942230 |
tct |
44942228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 153
Target Start/End: Original strand, 52951117 - 52951216
Alignment:
| Q |
54 |
tggtcagcagatgaaggccgatgcacaagaggttgctgatgctgcaaagattacagttggtgctcacaaatgaatctatgtagcggggagctctcttaag |
153 |
Q |
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| T |
52951117 |
tggtcagtaaatgaaggcaaaggcacgagaggttgctgacgcagtaaaaagtacagatggtgctcacaaatgaatctatgaagcggagagttctcttaag |
52951216 |
T |
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