View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4894_low_2 (Length: 328)
Name: NF4894_low_2
Description: NF4894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4894_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 317
Target Start/End: Original strand, 10933713 - 10933760
Alignment:
| Q |
270 |
aagcttcatttaatgtaaaaatggaggatttcatgtgaatgatgatgt |
317 |
Q |
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| T |
10933713 |
aagcttcattcaatgtaaaaatggaggatttcatgtgaatgaagatgt |
10933760 |
T |
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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 10933609 - 10933647
Alignment:
| Q |
18 |
gtgtgagcttccgaaattcccaatccctcttcatcctta |
56 |
Q |
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| T |
10933609 |
gtgtgagcttccgaaattcccaatccttcttcatcctta |
10933647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 10933644 - 10933678
Alignment:
| Q |
226 |
cttaattacccaaccaaagaaacttggtaaaatcc |
260 |
Q |
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| T |
10933644 |
cttaattgcccaaccaaagaaacttggtaaaatcc |
10933678 |
T |
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