View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4894_low_3 (Length: 261)
Name: NF4894_low_3
Description: NF4894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4894_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 2486285 - 2486511
Alignment:
| Q |
13 |
aatattgatataccattaaacacaacacaacaaaaattatttatgtacgtatttgttgcttttgaattagaaatgctcacatagccacaaaaatcataaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486285 |
aatattgatataccattaaacacaacacaacaaaaattatttatgta----tttgttgcttttgaattagaaatgctcacatagccacaaaaatcataaa |
2486380 |
T |
|
| Q |
113 |
cactaacctatatttcattcataaacattaatctttcatacaacaaaatccaaagcatgttccatacataagagttcaaaacgaacttaaaaaattacaa |
212 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2486381 |
cactaacctat--ttcattcataaacattaatctttcatacaacaaaatccaaagcatgttccatacataagagttcaaaacgaacttaaaaaatgacaa |
2486478 |
T |
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| Q |
213 |
tatgcactatgccataataaataatgtagaata |
245 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2486479 |
tatgcactatgccataataaataatgtagaata |
2486511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 27088871 - 27089097
Alignment:
| Q |
13 |
aatattgatataccattaaacacaacacaacaaaaattatttatgtacgtatttgttgcttttgaattagaaatgctcacatagccacaaaaatcataaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27088871 |
aatattgatataccattaaacacaacacaacaaaaattatttatgta----tttgttgcttttgaattagaaatgctcacatagccacaaaaatcataaa |
27088966 |
T |
|
| Q |
113 |
cactaacctatatttcattcataaacattaatctttcatacaacaaaatccaaagcatgttccatacataagagttcaaaacgaacttaaaaaattacaa |
212 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
27088967 |
cactaacctat--ttcattcataaacattaatctttcatacaacaaaatccaaagcatgttccatacataagagttcaaaacgaacttaaaaaatgacaa |
27089064 |
T |
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| Q |
213 |
tatgcactatgccataataaataatgtagaata |
245 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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|
| T |
27089065 |
tatgcactatgccataataaataatgtagaata |
27089097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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