View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4894_low_4 (Length: 203)

Name: NF4894_low_4
Description: NF4894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4894_low_4
NF4894_low_4
[»] chr5 (2 HSPs)
chr5 (32-187)||(8523424-8523579)
chr5 (32-173)||(1009470-1009611)
[»] chr3 (1 HSPs)
chr3 (32-187)||(3455300-3455455)
[»] chr8 (1 HSPs)
chr8 (39-187)||(42878508-42878656)
[»] chr1 (3 HSPs)
chr1 (103-163)||(3616561-3616621)
chr1 (103-150)||(15743631-15743678)
chr1 (104-163)||(52077837-52077896)
[»] chr4 (2 HSPs)
chr4 (103-153)||(1520920-1520970)
chr4 (107-155)||(34327114-34327162)
[»] chr7 (1 HSPs)
chr7 (103-155)||(48312399-48312451)


Alignment Details
Target: chr5 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 32 - 187
Target Start/End: Complemental strand, 8523579 - 8523424
Alignment:
Q  32 tttttcagaaaaattcagaaacctcgactatcatcagtaaatggaaatttctttactctttccatcatcattcatcaacaacaacaacatcattatcacc 131  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8523579 ttttccagaaaaattcaaaaacctcgaccatcatcagtaaatggaaaattctttactctttccatcatcattcatcaacaacaacaacatcatcatcacc 8523480  T
Q  132 attaatttctatcaataacaaccctagaaaaacaaacccaattgtagatcaataac 187  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  8523479 attaatttctatcaataacaaccccagaaaaacaaacccaattgcagatcaataac 8523424  T

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Target: chr5; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 32 - 173
Target Start/End: Original strand, 1009470 - 1009611
Alignment:
Q  32 tttttcagaaaaattcagaaacctcgactatcatcagtaaatggaaatttctttactctttccatcatcattcatcaacaacaacaacatcattatcacc 131  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1009470 tttttcagaaaaattcagaaacctcgaccatcatcagtaaatggaaaattctttactctttccatcatcattcatcaacaacaacaacatcatcatcacc 1009569  T
Q  132 attaatttctatcaataacaaccctagaaaaacaaacccaat 173  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  1009570 attaatttctatcaataacaaccccagaaaaacaaactcaat 1009611  T

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Target: chr3 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 32 - 187
Target Start/End: Complemental strand, 3455455 - 3455300
Alignment:
Q  32 tttttcagaaaaattcagaaacctcgactatcatcagtaaatggaaatttctttactctttccatcatcattcatcaacaacaacaacatcattatcacc 131  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3455455 ttttccagaaaaattcagaaacctcgaccatcatcagtaaatggaaaattctttactctttccatcatcattcatcaacaacaacaacatcataatcacc 3455356  T
Q  132 attaatttctatcaataacaaccctagaaaaacaaacccaattgtagatcaataac 187  Q
    |||||||||||||||||||||||| | ||||||||||||||||  | |||||||||    
T  3455355 attaatttctatcaataacaaccccacaaaaacaaacccaattacatatcaataac 3455300  T

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Target: chr8 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 42878656 - 42878508
Alignment:
Q  39 gaaaaattcagaaacctcgactatcatcagtaaatggaaatttctttactctttccatcatcattcatcaacaacaacaacatcattatcaccattaatt 138  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  42878656 gaaaaattcagaaacctcgaccatcatcagtaaatggaaaattctttactctttccatcatccttcatcaacaacaacaacatcatcatcaccattaatt 42878557  T
Q  139 tctatcaataacaaccctagaaaaacaaacccaattgtagatcaataac 187  Q
    ||||||||||||||||| | |||||||||| |||||| |||||||||||    
T  42878556 tctatcaataacaaccccaaaaaaacaaactcaattgcagatcaataac 42878508  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 3616621 - 3616561
Alignment:
Q  103 tcatcaacaacaacaacatcattatcaccattaatttctatcaataacaaccctagaaaaa 163  Q
    ||||||||||||||| |||||| ||||||||| |||||||| ||||| || || |||||||    
T  3616621 tcatcaacaacaacatcatcatgatcaccattgatttctattaataataaacccagaaaaa 3616561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 15743631 - 15743678
Alignment:
Q  103 tcatcaacaacaacaacatcattatcaccattaatttctatcaataac 150  Q
    ||||||||||||| |||||||| ||||||||| ||||||||| |||||    
T  15743631 tcatcaacaacaataacatcatcatcaccattgatttctatccataac 15743678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 52077896 - 52077837
Alignment:
Q  104 catcaacaacaacaacatcattatcaccattaatttctatcaataacaaccctagaaaaa 163  Q
    ||||| ||||||||||||||| ||||||||| |||||||| ||||| || || |||||||    
T  52077896 catcatcaacaacaacatcatcatcaccattgatttctattaataataaacccagaaaaa 52077837  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 153
Target Start/End: Complemental strand, 1520970 - 1520920
Alignment:
Q  103 tcatcaacaacaacaacatcattatcaccattaatttctatcaataacaac 153  Q
    |||||||||| |||||||||||  |||||||| |||||| |||||||||||    
T  1520970 tcatcaacaataacaacatcatcgtcaccattgatttctgtcaataacaac 1520920  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 34327114 - 34327162
Alignment:
Q  107 caacaacaacaacatcattatcaccattaatttctatcaataacaaccc 155  Q
    ||||||||||| |||||| | |||||| |||| ||||||||||||||||    
T  34327114 caacaacaacatcatcatcaccaccatcaattactatcaataacaaccc 34327162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 48312451 - 48312399
Alignment:
Q  103 tcatcaacaacaacaacatcattatcaccattaatttctatcaataacaaccc 155  Q
    ||||| ||||||||||| |||| |||||||   ||||||||||||||||||||    
T  48312451 tcatccacaacaacaacttcatcatcaccaacgatttctatcaataacaaccc 48312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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