View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4895-Insertion-1 (Length: 925)
Name: NF4895-Insertion-1
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4895-Insertion-1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 282 - 925
Target Start/End: Complemental strand, 44849393 - 44848750
Alignment:
| Q |
282 |
acttagaagccaagtgaacactaccttacctcacatttttccagccactcatctctaacatttttgggtgtctcactccaacaatggtaagactaagaac |
381 |
Q |
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| T |
44849393 |
acttagaagccaagtgaacactaccttacgtcacatttttccagccactcatctctaacatttttgggtgtctcactccaacaatggtaagactaaggac |
44849294 |
T |
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| Q |
382 |
cacaaactgtgtgtggcactcttaatgacatcatcaacaactgcatt-ctaggagagtgagcctgtaaattatttaaagaaacaaaatattaagtaaata |
480 |
Q |
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| T |
44849293 |
cacaaactgtgtctggcgctcttaatgacatcatcaacaactgcattgctaggagagtgagcctgtaaattatttaaagaaacaaaatattaagtaaata |
44849194 |
T |
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| Q |
481 |
ttataacttacataagtattgaaagaaaaacaaagtattgtaacgtacactctaccgtatggtcttacaatgatatttccattggcatctctttctggca |
580 |
Q |
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| T |
44849193 |
ttgtaacttaaataagtattgaaagaaaaacaaagtattgtaacttacactctaccgtatggtcttacaatgatatttccattggcatctctttctggca |
44849094 |
T |
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| Q |
581 |
tgagatgaggattattttcctccacctcctcatcctcctcgcggtagtctccattttcctcctcattgcacatactcctatgcctgaagtcggcataaac |
680 |
Q |
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| T |
44849093 |
tgagatgaggattattttccttcacctcctcatcctcctcgcggtagtctccattttcctcctcattgcacatactcctatgcctgaagtccgcataaac |
44848994 |
T |
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| Q |
681 |
aagaatacttcaggggtagaggcatggatggtgtcgggtgggaaggtgatgcaagaggctgagacgatgctggagagggtcggtggagtggcagtggata |
780 |
Q |
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| T |
44848993 |
aagaatacttcaggggtagaggcatggatggtgtcgggtgggaaggtgatgcaagaggctgagacgatgctggagagggtcggtggaatggcagtggata |
44848894 |
T |
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| Q |
781 |
tttgcccaagaatcgctcaacatctgatagcatgagcctttctttatcaccataagacaaatcaaacgagacaaaacgtaaacacatttagaactagaca |
880 |
Q |
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| T |
44848893 |
tttgcccaagaatcgttcaacatctgatagcatgagcctttctttatcaccataagacaaatcaaacaagacaaaacgtaaacacatttagaactagaca |
44848794 |
T |
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| Q |
881 |
caa--cagtgtgcccaaacaacttcaaagaaacatggtcaaaagtca |
925 |
Q |
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| T |
44848793 |
caaaccagtgtg-ccaaacaac-tcaaagaaacat-gtcaaaagtca |
44848750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 44849492 - 44849438
Alignment:
| Q |
207 |
tgattatgaggatcccaaggcaatttctcttgcaaaatgatccatccattatgct |
261 |
Q |
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| T |
44849492 |
tgattatgaggatcccaaggcaatttctcttgcaaaatgatccattcattatgct |
44849438 |
T |
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