View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4895-Insertion-13 (Length: 178)
Name: NF4895-Insertion-13
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4895-Insertion-13 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 8 - 178
Target Start/End: Original strand, 35165570 - 35165740
Alignment:
| Q |
8 |
gaaacctcattgtaagaccaagcaaattgcttcattgatatttcttttgtcttttgtcaaaagcttcagaataatctcctcatcatttgtaccatataac |
107 |
Q |
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| T |
35165570 |
gaaacctcattgtaagaccaagcaaattgcttcattgatatttcttttgtcttttgtcaaaagcttcaaaataatctcctcatcatttgtaccatataac |
35165669 |
T |
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| Q |
108 |
tatattttatgcatacaccaatgaatttctcgccttttcattttacatgtacttatcttcatgcttgtgct |
178 |
Q |
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| T |
35165670 |
tatattttatgcatacaccaatgaatttctcgctttttcattttacatgtacttatcttcatgcttgtgct |
35165740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 114; E-Value: 4e-58
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 44792061 - 44791877
Alignment:
| Q |
8 |
gaaacctcattgtaagaccaagcaaattgcttcattgatatttcttttgtcttttgtcaaaagcttcagaataatctcct--------------catcat |
93 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
44792061 |
gaaacctcattgtaagaccaagcaaattgcttcattgatatttcttttgtcttttgtcaaaagcttcaaaataatctatattttatattttatgcatcat |
44791962 |
T |
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| Q |
94 |
ttgtaccatataactatattttatgcatacaccaatgaatttctcgccttttcattttacatgtacttatcttcatgcttgtgct |
178 |
Q |
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| T |
44791961 |
ttgtaccatataactatattttatgcatacaccaatgaatttctcgctttttcattttacacgtacttatcttcatgcttgtgct |
44791877 |
T |
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