View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4895-Insertion-16 (Length: 79)

Name: NF4895-Insertion-16
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4895-Insertion-16
NF4895-Insertion-16
[»] chr5 (1 HSPs)
chr5 (8-79)||(188110-188181)
[»] chr4 (1 HSPs)
chr4 (19-79)||(55475873-55475933)
[»] scaffold0526 (1 HSPs)
scaffold0526 (20-79)||(8041-8100)
[»] scaffold0684 (1 HSPs)
scaffold0684 (8-60)||(5401-5453)
[»] scaffold0163 (1 HSPs)
scaffold0163 (8-60)||(2665-2717)
[»] scaffold1892 (1 HSPs)
scaffold1892 (15-62)||(1211-1258)
[»] scaffold1178 (1 HSPs)
scaffold1178 (15-62)||(222-269)
[»] chr8 (1 HSPs)
chr8 (20-63)||(40541980-40542023)
[»] chr3 (1 HSPs)
chr3 (15-55)||(26207489-26207529)
[»] chr6 (1 HSPs)
chr6 (23-62)||(28669206-28669245)


Alignment Details
Target: chr5 (Bit Score: 64; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-28
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 188181 - 188110
Alignment:
Q  8 gatggaagataattcatataattgacgatttatttgtgatttatgattacatataacctttgccattaaata 79  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  188181 gatggaagataatccatataattgacgatttattcgtgatttatgattacatataacctttgccattaaata 188110  T

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Target: chr4 (Bit Score: 45; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 55475873 - 55475933
Alignment:
Q  19 attcatataattgacgatttatttgtgatttatgattacatataacctttgccattaaata 79  Q
    ||||||||||||||||||||||| |||||||||||||  |||||| |||||||||||||||    
T  55475873 attcatataattgacgatttattcgtgatttatgattgaatataaactttgccattaaata 55475933  T

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Target: scaffold0526 (Bit Score: 44; Significance: 1e-16; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 8041 - 8100
Alignment:
Q  20 ttcatataattgacgatttatttgtgatttatgattacatataacctttgccattaaata 79  Q
    |||||||||||| |||| |||| ||||||||||||||||||||| |||||||||||||||    
T  8041 ttcatataattggcgatatattcgtgatttatgattacatataagctttgccattaaata 8100  T

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Target: scaffold0684 (Bit Score: 37; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 5453 - 5401
Alignment:
Q  8 gatggaagataattcatataattgacgatttatttgtgatttatgattacata 60  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||||| ||||    
T  5453 gatggaggataatccatataattgacgatttctttgtgatttatgattgcata 5401  T

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Target: scaffold0163 (Bit Score: 37; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 2665 - 2717
Alignment:
Q  8 gatggaagataattcatataattgacgatttatttgtgatttatgattacata 60  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||||| ||||    
T  2665 gatggaggataatccatataattgacgatttctttgtgatttatgattgcata 2717  T

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Target: scaffold1892 (Bit Score: 32; Significance: 0.000000001; HSPs: 1)
Name: scaffold1892
Description:

Target: scaffold1892; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 1211 - 1258
Alignment:
Q  15 gataattcatataattgacgatttatttgtgatttatgattacatata 62  Q
    |||||| |||||||||| |||||| |||||||||||||||| ||||||    
T  1211 gataatccatataattggcgatttctttgtgatttatgattgcatata 1258  T

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Target: scaffold1178 (Bit Score: 32; Significance: 0.000000001; HSPs: 1)
Name: scaffold1178
Description:

Target: scaffold1178; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 222 - 269
Alignment:
Q  15 gataattcatataattgacgatttatttgtgatttatgattacatata 62  Q
    |||||| |||||||||| |||||| |||||||||||||||| ||||||    
T  222 gataatccatataattggcgatttctttgtgatttatgattgcatata 269  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 40542023 - 40541980
Alignment:
Q  20 ttcatataattgacgatttatttgtgatttatgattacatataa 63  Q
    |||||||||||| ||||||||| |||| ||||||||||||||||    
T  40542023 ttcatataattggcgatttattcgtgacttatgattacatataa 40541980  T

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Target: chr3 (Bit Score: 29; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 26207489 - 26207529
Alignment:
Q  15 gataattcatataattgacgatttatttgtgatttatgatt 55  Q
    |||||| ||||||||||||||||| || |||||||||||||    
T  26207489 gataatccatataattgacgatttcttcgtgatttatgatt 26207529  T

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Target: chr6 (Bit Score: 28; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 28; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 62
Target Start/End: Original strand, 28669206 - 28669245
Alignment:
Q  23 atataattgacgatttatttgtgatttatgattacatata 62  Q
    |||||||||||||||| || ||||||||||||| ||||||    
T  28669206 atataattgacgatttcttcgtgatttatgattgcatata 28669245  T

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