View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4895-Insertion-2 (Length: 902)
Name: NF4895-Insertion-2
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4895-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 742; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 8 - 793
Target Start/End: Original strand, 14794785 - 14795568
Alignment:
| Q |
8 |
cctattacctaagatgtctttacaagaacaaccaatgcagcagcaacaacaatagcaaccagttcaagtctatccaaccactgtcacataccaatatgca |
107 |
Q |
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| T |
14794785 |
cctattacctaagatgtctttacaagaacaaccaatgcagcaacaacaacagcagcaaccagttcaagtctatccaaccactgtcacataccaatatgca |
14794884 |
T |
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| Q |
108 |
ccacctgaacctgaccaccattcatccaatggatcatttgggtcagtatttgttgtcttagccatcataatagtaatctctgctgttgcttgttgtcttg |
207 |
Q |
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| T |
14794885 |
ccacctgaacctgaccaccattcatccaatggatcatttgggtcagtatttgttgtcttagccatcataatagtaatctctgctgttgcttgttgtcttg |
14794984 |
T |
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| Q |
208 |
gaaggttttgcagccgccgcggcaacggcaaaagccacagtcagaaaccagttaagcatcaaaagcagcagaatcaccaacactcacgtccaaaagaagt |
307 |
Q |
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| T |
14794985 |
gaaggttttgcagccgccgcggcaacggcaaaagccacagtcagaaaccagttaagcatcaaaagcagcagaatcaccaacactcacgtccaaaagaagt |
14795084 |
T |
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| Q |
308 |
tgatattgaatttggatttgacaaaaagattgcagcttctaagcctatgaataatggacatggaggctttccaaaaaataatggacatggtggcttttca |
407 |
Q |
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| T |
14795085 |
tgatattgaatttggatttgacaaaaagattgcagcttctaagcctatgaataatggacatggaggctttccaaaaaataatggacatggtggcttttca |
14795184 |
T |
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| Q |
408 |
aaaaataatggacatggaggtgttagagtacagaagccagttgctcaaggtcaccatgatatgaagagttttgaaataaaacttggtcctcctcaaggaa |
507 |
Q |
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| T |
14795185 |
aaaaataatggacatggaggtgttagagtacagaagccagttgctcaaggtcaccatgatatgaagagttttgaaataaagcttggtcctcctcaaggaa |
14795284 |
T |
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| Q |
508 |
agtataggccaggtgcatgatggagttacaagagagtattatgtagacataatccatcttcttaattatatcaatcattttgttgctatttatcttctct |
607 |
Q |
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| T |
14795285 |
agtataggccaggtgcataatggagttacaagagagtattatgtagacataatccatcttcttaattatatcaatcattttgttgctatttatcttctct |
14795384 |
T |
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| Q |
608 |
gtttttctctgtctcttagatttccaagtgcaagatgaaatgtataattatcttttctatttcttttttgcataccaatgttttattatggattgtgaaa |
707 |
Q |
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| T |
14795385 |
gtttttctctgtctcttagatttccaagtgcaagatgaaatgtataattatcttttctatttcttttttgcataccaatgttttattatggattgtgaaa |
14795484 |
T |
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| Q |
708 |
gtaaaaaacaatgtaaacatttagaaataattaaattaaaattgatggattgattggattgaaaatgatgggtggtcttaaattaa |
793 |
Q |
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| T |
14795485 |
gt-aaaaacaatgtaaacatttagaaataattaaattaaaattgatggattgattggattgaaaattat-ggttgtcttaaattaa |
14795568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 787 - 845
Target Start/End: Original strand, 14795785 - 14795842
Alignment:
| Q |
787 |
aaattaatggtcatttgaatcggttcttcattaagtgaaagaaagaattagtgcatcac |
845 |
Q |
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| T |
14795785 |
aaattaatg-tcatttgatttggttcttaattaagtgaaagaaagaattagtgcatcac |
14795842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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