View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4895-Insertion-3 (Length: 778)

Name: NF4895-Insertion-3
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4895-Insertion-3
NF4895-Insertion-3
[»] chr3 (3 HSPs)
chr3 (25-485)||(40975071-40975531)
chr3 (363-481)||(40959035-40959153)
chr3 (86-228)||(40958767-40958909)
[»] chr8 (2 HSPs)
chr8 (364-481)||(1601422-1601539)
chr8 (364-481)||(1661090-1661207)
[»] chr7 (1 HSPs)
chr7 (364-481)||(13949406-13949523)
[»] chr5 (3 HSPs)
chr5 (115-233)||(30903528-30903646)
chr5 (363-475)||(30903932-30904044)
chr5 (107-233)||(9259980-9260108)
[»] chr1 (1 HSPs)
chr1 (364-481)||(35163846-35163963)
[»] chr6 (1 HSPs)
chr6 (107-233)||(32446316-32446444)


Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 25 - 485
Target Start/End: Complemental strand, 40975531 - 40975071
Alignment:
Q  25 ggcagaatcatatcccatttattcatacgtaatttcatcaataattttaggtcgggttgtttttggcaatcttctgccacgtacaaaggaactgaataga 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40975531 ggcagactcatatcccatttattcatacgtaatttcatcaataattttaggtcgggttgtttttggcaatcttctgccacgtacaaaggaactgaataga 40975432  T
Q  125 tgcaatgctttagaaggttgcgcataaggtactatgtgacctgctcctcttacggtggcgaaagtcaataaatttccatattcagttacccaacctccaa 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40975431 tgcaatgctttagaaggttgcgcataaggtactatgtgacctgctcctcttacggtggcgaaagtcaataaatttccatattcagttacccaacctccaa 40975332  T
Q  225 cctacacatgaattaatttggaaaatagaagtgaataaaattgtaaaccatactaattaaaataatttttcatgtagaaaatggttaaattgttactaat 324  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40975331 cctacacatgaattaatttggaaattagaagtgaataaaattgtaaaccatactaattaaaataatttttcatgtagaaaatggttaaattgttactaat 40975232  T
Q  325 acacacactcgtgcgcacacaaacacacctggtctctatggaaccaaactctatatgagtctgtaatgttgaaattcaggtcatgagctagttcacgaat 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40975231 acacacactcgtgcgcacacaaacacacctggtctctatggaaccaaactctatatgagtctgtaatgttgaaattcaggtcatgagctagttcacgaat 40975132  T
Q  425 gagtcttcgagaacctaataatggcacaactgaatcttgatctccactgtcataatattaa 485  Q
    | ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  40975131 gtgtcttcgagaacctagtaatggcacaattgaatcttgatctccactgtcataatattaa 40975071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 363 - 481
Target Start/End: Original strand, 40959035 - 40959153
Alignment:
Q  363 tggaaccaaactctatatgagtctgtaatgttgaaattcaggtcatgagctagttcacgaatgagtcttcgagaacctaataatggcacaactgaatctt 462  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||    
T  40959035 tggaaccaaactctatatgagtctgtaatcttgaatttcatgtcatgagctagttcacgaatgagtgttcgagaacctagtaatggaacaactgaatctt 40959134  T
Q  463 gatctccactgtcataata 481  Q
    | |||||||| ||||||||    
T  40959135 ggtctccactatcataata 40959153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 86 - 228
Target Start/End: Original strand, 40958767 - 40958909
Alignment:
Q  86 tttggcaatcttctgccacgtacaaaggaactgaatagatgcaatgctttagaaggttgcgcataaggtactatgtgacctgctcctcttacggtggcga 185  Q
    |||||||||||  | ||| | |||||||| ||||||||||| |||||  ||||||||||  |||| || || |||||||| ||||||||||| |||||||    
T  40958767 tttggcaatctctttccatgcacaaaggagctgaatagatgtaatgccctagaaggttgtccatatggcaccatgtgacccgctcctcttacagtggcga 40958866  T
Q  186 aagtcaataaatttccatattcagttacccaacctccaaccta 228  Q
    ||||||| |||||| |||| |||||||||||||||||| ||||    
T  40958867 aagtcaacaaattttcatactcagttacccaacctccagccta 40958909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 9e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 364 - 481
Target Start/End: Original strand, 1601422 - 1601539
Alignment:
Q  364 ggaaccaaactctatatgagtctgtaatgttgaaattcaggtcatgagctagttcacgaatgagtcttcgagaacctaataatggcacaactgaatcttg 463  Q
    |||||||| ||| ||||| | ||||||| ||||| |||||||||| ||| ||||||||||||||| ||||||||||||  ||||||||||| ||||||||    
T  1601422 ggaaccaagctccatatgggactgtaatcttgaacttcaggtcatcagccagttcacgaatgagtgttcgagaacctagcaatggcacaacggaatcttg 1601521  T
Q  464 atctccactgtcataata 481  Q
     |||||||||||||||||    
T  1601522 gtctccactgtcataata 1601539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 364 - 481
Target Start/End: Original strand, 1661090 - 1661207
Alignment:
Q  364 ggaaccaaactctatatgagtctgtaatgttgaaattcaggtcatgagctagttcacgaatgagtcttcgagaacctaataatggcacaactgaatcttg 463  Q
    |||||||| ||| ||||| | ||||||| ||||| |||||||||| ||| ||||||||||||||| ||||||||||||  ||||||||||| |||||||     
T  1661090 ggaaccaagctccatatgggactgtaatcttgaacttcaggtcatcagccagttcacgaatgagtgttcgagaacctagcaatggcacaacggaatcttt 1661189  T
Q  464 atctccactgtcataata 481  Q
     |||||||||||||||||    
T  1661190 gtctccactgtcataata 1661207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 364 - 481
Target Start/End: Complemental strand, 13949523 - 13949406
Alignment:
Q  364 ggaaccaaactctatatgagtctgtaatgttgaaattcaggtcatgagctagttcacgaatgagtcttcgagaacctaataatggcacaactgaatcttg 463  Q
    |||||||| ||| ||||| | ||||||| ||||| |||||||||| ||| ||||||||||||||| ||||||||||||  ||||||||||||||||||||    
T  13949523 ggaaccaagctccatatgggactgtaatcttgaacttcaggtcatcagccagttcacgaatgagtgttcgagaacctagcaatggcacaactgaatcttg 13949424  T
Q  464 atctccactgtcataata 481  Q
     ||||  |||||||||||    
T  13949423 gtctctgctgtcataata 13949406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 30903528 - 30903646
Alignment:
Q  115 actgaatagatgcaatgctttagaaggttgcgcataaggtactatgtgacctgctcctcttacggtggcgaaagtcaataaatttccatattcagttacc 214  Q
    |||||| ||||||| |||| |||||||||| ||||| ||||| |||||| |||| || |  |||||||||||||| || ||||||||||| || ||| ||    
T  30903528 actgaaaagatgcagtgctctagaaggttgtgcatacggtaccatgtgagctgcaccccgcacggtggcgaaagttaacaaatttccatactcggttgcc 30903627  T
Q  215 caacctccaacctacacat 233  Q
    |||||||||||||||||||    
T  30903628 caacctccaacctacacat 30903646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 363 - 475
Target Start/End: Original strand, 30903932 - 30904044
Alignment:
Q  363 tggaaccaaactctatatgagtctgtaatgttgaaattcaggtcatgagctagttcacgaatgagtcttcgagaacctaataatggcacaactgaatctt 462  Q
    ||||||||| ||| |||||   ||||||  ||||| |||||||||| ||| ||||||||||||||| |||||||||||| |||||||||||| |||||||    
T  30903932 tggaaccaagctccatatggaactgtaaccttgaacttcaggtcatcagccagttcacgaatgagtgttcgagaacctagtaatggcacaacggaatctt 30904031  T
Q  463 gatctccactgtc 475  Q
    | ||||| |||||    
T  30904032 ggtctccgctgtc 30904044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 233
Target Start/End: Original strand, 9259980 - 9260108
Alignment:
Q  107 acaaaggaactgaatagatgcaatgctttagaaggttgcgcataaggtactatgtgacctgctcctcttacggtggcgaaagtcaataaatttccatatt 206  Q
    |||||||||||||||||||||| | || |||||||||| ||||| ||||| || ||| |||||||   ||  |||  |||||| || |||||| |||| |    
T  9259980 acaaaggaactgaatagatgcagtactctagaaggttgtgcatagggtaccatatgagctgctccctatatagtgatgaaagttaacaaattttcatact 9260079  T
Q  207 c--agttacccaacctccaacctacacat 233  Q
    |  || | |||||||||||||||||||||    
T  9260080 caaagatgcccaacctccaacctacacat 9260108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 364 - 481
Target Start/End: Complemental strand, 35163963 - 35163846
Alignment:
Q  364 ggaaccaaactctatatgagtctgtaatgttgaaattcaggtcatgagctagttcacgaatgagtcttcgagaacctaataatggcacaactgaatcttg 463  Q
    |||||||| ||| ||||| | ||||||| | ||| |||||   || ||||||||||||||||||| ||||||||||||  |||||||||||  |||||||    
T  35163963 ggaaccaagctccatatgggactgtaatctagaacttcagaagatcagctagttcacgaatgagtgttcgagaacctagcaatggcacaacgaaatcttg 35163864  T
Q  464 atctccactgtcataata 481  Q
     ||||| |||||||||||    
T  35163863 gtctccgctgtcataata 35163846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 233
Target Start/End: Complemental strand, 32446444 - 32446316
Alignment:
Q  107 acaaaggaactgaatagatgcaatgctttagaaggttgcgcataaggtactatgtgacctgctcctcttacggtggcgaaagtcaataaatttccatatt 206  Q
    |||||||||||||||||||||  |||| |||||||| | | ||| ||||| |||||| ||||||| | ||  ||||||||||| ||  ||||| |||| |    
T  32446444 acaaaggaactgaatagatgcggtgctctagaaggtcgtgtatagggtaccatgtgagctgctccccatatagtggcgaaagttaacgaattttcatact 32446345  T
Q  207 c--agttacccaacctccaacctacacat 233  Q
    |  || | |||||||||||||||||||||    
T  32446344 caaagatgcccaacctccaacctacacat 32446316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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