View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4895-Insertion-6 (Length: 500)
Name: NF4895-Insertion-6
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4895-Insertion-6 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 49 - 500
Target Start/End: Original strand, 37749686 - 37750135
Alignment:
| Q |
49 |
gtccaatatgattcacaaacttgcatcaattatgatgcaggttatacatttattaattattattatcctatgcgcgtgtttgtttggannnnnnnnnnca |
148 |
Q |
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| T |
37749686 |
gtccaatatgattcacaaacttgcatcaattatgatgcaggttatacatttattaattattattatcctatgcgcgtgtttgtttggattttttttt-ca |
37749784 |
T |
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| Q |
149 |
aggttttacatggtaatgttatagtatgtcgcaagaaaacaaaagggtttgtagttattgtttgtggttcctatagtatatttagcttgtgctactgttt |
248 |
Q |
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| T |
37749785 |
aggttttacagggtaatgttatagtatgtcgcaagaaaacaaaagggtttgtagttattgtttgtggttcctatagtatatttagcttgtgctactgttt |
37749884 |
T |
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| Q |
249 |
agtcccatacacaaagccattagtagaggttgtatgcaatgcctccatataactaactttatttattcatgaatttatgtttgatatgagttgaataatt |
348 |
Q |
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| T |
37749885 |
agtcccatacacacagccattagtagaggttgtatgcaatgcctccatataactaactttatttattcatgaatttatgtttgatatgagttgaataatt |
37749984 |
T |
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| Q |
349 |
atgtactgatattagctaattgattttaaaataattccatgtctttcacgccattttcagaagaggacctcgtgagttggaagaccaatttgtgtgagta |
448 |
Q |
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| T |
37749985 |
atgtactgatattagctaatt-attttaaaataattccatatctttcacgccattttcagaagaggacctcgtgagttggaggaccaatttgtgtgagta |
37750083 |
T |
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| Q |
449 |
aattgtttcattatgcctgggtccctttactgaattcattagcttttaagtg |
500 |
Q |
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| T |
37750084 |
aattgtttcattatgcctgggtccctttactgaattcattagcttttaagtg |
37750135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 189 - 455
Target Start/End: Original strand, 37734353 - 37734611
Alignment:
| Q |
189 |
aaaagggtttgtagttattgtttgtggttcctatagtat----atttagcttgtgctactgtttagtcccatacacaaagccattagtagaggttgtatg |
284 |
Q |
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| T |
37734353 |
aaaagggtttatagttattgtttgtggctcctatagtattgttatttagcttgtgctactgttaagtcccgtatacactgcgattggtaaaggttgtaag |
37734452 |
T |
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| Q |
285 |
caatgcctccatataactaactttatttattcatgaatttatgtttgatatgagttgaataattatgtactgatattagctaattgattttaaaataatt |
384 |
Q |
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| T |
37734453 |
caatgc-----------tagatttatttattcgtgaatttatgtttgatatgaattgaataattatgtaccggtattagctaattgattttaaaataatt |
37734541 |
T |
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| Q |
385 |
ccatgtctttcacgccattttcagaagaggacctcgtgagttggaagaccaatttgtgtgagtaaattgtt |
455 |
Q |
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| T |
37734542 |
ccatatctttcacgccattttcagaaga-tacctcgtgagttgtaagaccaatttgtgagagtaaattgtt |
37734611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 37734176 - 37734271
Alignment:
| Q |
8 |
caacattggtgaagactgcgagatcacttactcctgtggtggtccaatatgattcacaaacttgcatcaattatgatgcaggttatacatttatta |
103 |
Q |
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| T |
37734176 |
caacattggtgaagactgcgagatcacttactcctgtggtggtccaatatgattctcaaacttgcattgattatgatgcaggttatacagttatta |
37734271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 314 - 442
Target Start/End: Complemental strand, 38612572 - 38612441
Alignment:
| Q |
314 |
ttcatgaatttatgtttgatatgagttgaataattatgtactgatattagctaattgattttaaaataattccatgtctttcacgcca---ttttcagaa |
410 |
Q |
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| T |
38612572 |
ttcatgaatttatgtttgatatgaattgaataattatatattcatattagctaattaattttaaaataattccttgtctttcacgtcattgttttcagaa |
38612473 |
T |
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| Q |
411 |
ga-ggacctcgtgagttggaagaccaatttgtg |
442 |
Q |
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| T |
38612472 |
gatcgagctcttgagttggaa-accaatttgtg |
38612441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 37749657 - 37749685
Alignment:
| Q |
8 |
caacattggtgaagactgcgagatcactt |
36 |
Q |
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| T |
37749657 |
caacattggtgaagactgcgagatcactt |
37749685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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