View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4895-Insertion-7 (Length: 343)
Name: NF4895-Insertion-7
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4895-Insertion-7 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 5 - 343
Target Start/End: Complemental strand, 42552479 - 42552141
Alignment:
| Q |
5 |
acacaattgacatttcttcaattggaacttccttggtctccggaaggaacttgtaaataaatgctgtcatcacnnnnnnnnnnnnggcgaagaagataaa |
104 |
Q |
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| T |
42552479 |
acacaattgacatttcttcaattggaacttccttggtctccggaaggaacttgtaaataaatgctgtcatcagaaaaagaaaaaaggcgaagaagataaa |
42552380 |
T |
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| Q |
105 |
caatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgctttgagcagccgaa |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42552379 |
caatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaatgacaaaggtgcaaatcatgttaacagagacattaatgctttgagcagcagaa |
42552280 |
T |
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| Q |
205 |
cgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcctacaacatacacacaaatacacatgacaacca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42552279 |
cgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcctacaacatacacacaaatacacatgacaacca |
42552180 |
T |
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| Q |
305 |
caatagcataccactttgacagagtgtctgggtcaccat |
343 |
Q |
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| T |
42552179 |
caatagcataccactttgacagagtgtctgggtcaccat |
42552141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 272
Target Start/End: Original strand, 1238930 - 1239108
Alignment:
| Q |
94 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
193 |
Q |
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| T |
1238930 |
aagaagatgaagagtccaaacttcatgtggcacaacatggtggtgaaaacttgagcaatggcaaatgtgaaaatcatgttaaccgaaacattgacacttt |
1239029 |
T |
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| Q |
194 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcc |
272 |
Q |
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| T |
1239030 |
gagccgctgatcgaacctcaagtggaaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcgaatcc |
1239108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 269
Target Start/End: Original strand, 42517549 - 42517724
Alignment:
| Q |
94 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
193 |
Q |
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| T |
42517549 |
aagaagatgaatagtccaaacttcatgtggcacaacatggcggtgaaaacttgagcaatggcaaatgtgaaaatcatgttaacagaaacattgacacttt |
42517648 |
T |
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| Q |
194 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaa |
269 |
Q |
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| T |
42517649 |
gagctgctgatcgcacctcaagtgggaaaatttcacttggcaccaaccatccaagaggaccccaagaccatgcaaa |
42517724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 42517468 - 42517520
Alignment:
| Q |
13 |
gacatttcttcaattggaacttccttggtctccggaaggaacttgtaaataaa |
65 |
Q |
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| T |
42517468 |
gacatttcttcaattggaacacctttggtctccggcaaaaacttgtaaataaa |
42517520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 18233740 - 18234071
Alignment:
| Q |
11 |
ttgacatttcttcaattggaacttccttggtctccggaaggaacttgtaaataaatgctgtcatcacnnnnnnnnnnnnggcgaagaagataaacaatcc |
110 |
Q |
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| T |
18233740 |
ttgacatttcttcgattggaactcccttcgtctctggcaaaaacttgtaaataaatccagtcatcacaacaacgaaaaaggcgaagaagataaataatcc |
18233839 |
T |
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| Q |
111 |
aaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgctttgagcagccgaacgaatt |
210 |
Q |
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| T |
18233840 |
aaacttcatgtgacaaagcattgtagtgaaaatttgagcaatgataaaggtgcaaatcatgttaacagagacattgatactttgagccgcagaacgaact |
18233939 |
T |
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| Q |
211 |
tcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcctacaacatacacacaaatacacatgacaaccacaatag |
310 |
Q |
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| T |
18233940 |
tcgagtgggaatatttcacttggcaccaaccaacctagaggaccccaagaccatgcaaatcctgctacgtacacacaaatgcacataacaacaacaattg |
18234039 |
T |
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| Q |
311 |
cataccactttgacagagtgtctgggtcacca |
342 |
Q |
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| T |
18234040 |
cataccactttggcaaaacgcctgggtcacca |
18234071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 265
Target Start/End: Original strand, 41971436 - 41971607
Alignment:
| Q |
94 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
193 |
Q |
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| T |
41971436 |
aagaagatgaagagtccaaacttcatgtggcacgacatggtggtgaaaactcgagcaatggcaaatgtgaaaatcatgttaaccgaaacattgacacttt |
41971535 |
T |
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| Q |
194 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatg |
265 |
Q |
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| T |
41971536 |
gagccgctgatcgcacctcaagtggaaaagtttcacttggcaccaaccatccaagaggaccccaagaccatg |
41971607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 273
Target Start/End: Complemental strand, 36202877 - 36202698
Alignment:
| Q |
94 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
193 |
Q |
| |
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||||||| ||||| ||||||||||||| |||||||||| | ||||| ||| ||||| | |||||| ||| |||||| ||||| || || | |||| |
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| T |
36202877 |
aagaagaggaacaaaccaaacttcatgtgacaaagcattatcaagaaaacttgtgcaactaagaaggtgaaaagcatgttcacagatacgtttacacttt |
36202778 |
T |
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| Q |
194 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagaccatgcaaatcct |
273 |
Q |
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| T |
36202777 |
gagctgcagaacgaatctccaatgggaaaatctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaatcct |
36202698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 94 - 263
Target Start/End: Original strand, 35922170 - 35922339
Alignment:
| Q |
94 |
aagaagataaacaatccaaacttcatgtaacaaagcattgtagtgaaaatttgagcaacgacaaaggtgcaaatcatgttaacagagacattaatgcttt |
193 |
Q |
| |
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|||||||||||||| ||||||||||||| ||| |||| || ||||| ||| ||||| | || ||| ||| |||||| ||||| ||||| | |||| |
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| T |
35922170 |
aagaagataaacaagccaaacttcatgtgacagagcagggttaagaaaacttgtgcaacaaagaatgtgaaaaacatgttcacagatacattgacacttt |
35922269 |
T |
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| Q |
194 |
gagcagccgaacgaatttcaagcggaaaaatctcactaggcaccaaccaacttagaggaccccaagacca |
263 |
Q |
| |
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|||||||||| ||||| || | ||||| |||||||| | ||||||||||| ||||||||||| ||||| |
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| T |
35922270 |
gagcagccgatcgaatctccaatggaaagatctcacttgtcaccaaccaaccaagaggaccccatgacca |
35922339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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