View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4895-Insertion-9 (Length: 329)
Name: NF4895-Insertion-9
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4895-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 19378718 - 19378424
Alignment:
| Q |
8 |
tctcattcatctttctttgaaatatcgcaatgagtttcaatagaagaatgataatggtggttctctttcatcattatcacaagaaagttgagaattaaca |
107 |
Q |
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| T |
19378718 |
tctcattcatctttctttgaaatatcgcaatgagtttcaatagaagaatgataatggtggttctctttcatcattatcacaagaaagttgagaatcaaca |
19378619 |
T |
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| Q |
108 |
taatcttcagtttgattgagttcttgaagatcacccttgttggggtcacaaaattgtgtgattgactttgcaacatcctttctgtttcatattgtattgt |
207 |
Q |
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| T |
19378618 |
taatcttcagtttgattgagttcttgaagatcacccttgttggggtcacaaaattgtgtgattgactttgcaacatcctttctgtttcatattgtattgt |
19378519 |
T |
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| Q |
208 |
cgcatttaatcaatattgaaacaatgaagctggcatttgcttgactcatcagataatttcaaactagactagtcattttggatcgacattatgat |
302 |
Q |
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| T |
19378518 |
cgcatttaatcaatattgaaacaatgaagctggcatttgcttgactcatcagataatttcaaactagactagtcattttggatcgacattatgat |
19378424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 146 - 299
Target Start/End: Complemental strand, 18018691 - 18018522
Alignment:
| Q |
146 |
gttggggtcacaaaattgtgtgattgactt-tgcaacatcctttctgtttcatattgtattgtcgcatttaatcaatattgaaacaatgaagctgg---- |
240 |
Q |
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| T |
18018691 |
gttggagtcacaaaattgtgtgattgacttctgccacaacatctctgtttcatattgtattgtcgcatttaatcaatagtgaaacaatgaagctggaaat |
18018592 |
T |
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| Q |
241 |
-----------catttgcttgactcatcagataatttcaaactagactagtcattttggatcgacattat |
299 |
Q |
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| T |
18018591 |
tctatctctattatttgcttgaatcatcacacaaattcaaactagactagtcattttggatcgacattat |
18018522 |
T |
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