View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4895_high_2 (Length: 492)
Name: NF4895_high_2
Description: NF4895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4895_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 22 - 428
Target Start/End: Complemental strand, 11030292 - 11029866
Alignment:
| Q |
22 |
attccggtgttagacacgcgtctttgtctgacatcggtacaatatgtgtcggataattcatacatgtatattttggtgtcgatgtccaatgttgttgaca |
121 |
Q |
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| T |
11030292 |
attccggtgttagacacgtgtcgatgtctgacatctgtacaatatgtgtcggaaaattcatacatgtatatttcggtgtcgatgtccaatgttgttgaca |
11030193 |
T |
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| Q |
122 |
ctagctgtgtcgatgtttctttgtcgttttcgttgcccgtgttagaatttgtggttaactattgtaacttttatgacctaac-tcatttgattggattac |
220 |
Q |
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| T |
11030192 |
ctagctgtgtcgatgtttctttgtcattttcgttgcccgcgttagaatttgtggttaactattgaaacttttatgacctaacttcattttattggatttc |
11030093 |
T |
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| Q |
221 |
attagaccatttttgctttactatttcttctttc-----atacagtagactacaatgtaattctattttttcttattccttatgctgaagtgaattacat |
315 |
Q |
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| T |
11030092 |
atgagatcatttttgctttactatttcttctttcattctatacagtagattacaatgtaattctattttttcttattccttatgctgaagtgaattacat |
11029993 |
T |
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| Q |
316 |
tttattttcatat-------------tgttgnnnnnnnnccgttcagattttttac-ttttgtgttgttacatacattctattttgcagtttggctaatg |
401 |
Q |
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| T |
11029992 |
tttattttcatattgtcgtctggttctgttattttttttccgttcagatttttaactttttgtgttgttacatacattctattttgcagtttggctaatg |
11029893 |
T |
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| Q |
402 |
tcaaccaactttttagacaattttaag |
428 |
Q |
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| T |
11029892 |
tcaaccaatttttgagacaattttaag |
11029866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 445 - 482
Target Start/End: Complemental strand, 11029247 - 11029210
Alignment:
| Q |
445 |
tatcacaaacaagacgatactagaatgattgtcctatg |
482 |
Q |
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| T |
11029247 |
tatcacaaacaagacggtactagaatgattgtcctatg |
11029210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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